Biotinylated Poly(3-Hexylthiophene-co-3-Methanolthiophene): A Langmuir Monolayer-Forming Copolymer

Abstract

Copolymers of 3-substituted thiophenes have been synthesized by organosynthetic routes. The chemical synthesis of the copolymer was carried out by dehydrogenation of 3-hexylthiophene and 3-methanolthiophene. Attachment of biotin to the resulting copolymer, poly(3-hexylthiophene-co-3-methanolthiophene) [PMHT], is accomplished by room temperature esterification using N,N-dicyclohexylcarbodiimide (DCC) and 4-pyrrolidinopyridine as catalyst. The resulting copolymers have well-defined chemical and electronic structures and molecular weights. The biotinylated copolymer forms a stable monolayer at the air-water interface due to the polar groups along the polymer backbone.     

Effect of chlorine on the adsorption of oxygen on Cu and Ag surfaces

Based on XPS and UVPS studies, it is shown that oxygen is preferentially adsorbed molecularly in the singlet state on Cu and Ag surfaces containing presorbed chlorine. Adsorption of chlorine on Cu and Ag surfaces containing presorbed atomic oxygen causes a disappearance of the oxygen. Extended Hückel calculations predict the observed behaviour.     

Cascade enantioselective synthesis of γ-aryl-γ-butyrolactones with a delayed stereoselective step

Enantioselective synthesis of γ-aryl-γ-butyrolactones is achieved using (S)-1-phenylethylamine as a chiral auxiliary. The synthesis involves cascade formation-destruction-formation of the chiral centre with a delayed stereoselective step. The actual stereoselective step has been found to be intramolecular nucleophilic attack on a diastereotopic carbocation formed, thereby resulting in the formation of non-racemic γ-aryl-γ-butyrolactones.     

Prediction of cyclohexane-water distribution coefficient for SAMPL5 drug-like compounds with the QMPFF3 and ARROW polarizable force fields

We present the performance of blind predictions of water—cyclohexane distribution coefficients for 53 drug-like compounds in the SAMPL5 challenge by three methods currently in use within our group. Two of them utilize QMPFF3 and ARROW, polarizable force-fields of varying complexity, and the third uses the General Amber Force-Field (GAFF). The polarizable FF’s are implemented in an in-house MD package, Arbalest. We find that when we had time to parametrize the functional groups with care (batch 0), the polarizable force-fields outperformed the non-polarizable one. Conversely, on the full set of 53 compounds, GAFF performed better than both QMPFF3 and ARROW. We also describe the torsion-restrain method we used to improve sampling of molecular conformational space and thus the overall accuracy of prediction. The SAMPL5 challenge highlighted several drawbacks of our force-fields, such as our significant systematic over-estimation of hydrophobic interactions, specifically for alkanes and aromatic rings.     

Suppression of the reversible thermal behavior of the layered double hydroxide (LDH) of Mg with Al: stabilization of nanoparticulate oxides

The layered double hydroxide of Mg with Al decomposes below 600 degrees C with the loss of nearly 48% mass, resulting in the formation of an oxide residue having the rock salt structure and nanoparticulate morphology. However, this product reconstructs back into the parent LDH, owing to its compositional and morphological metastability. The oxide can be kinetically stabilized within an amorphous phosphate network built up through an ex situ reaction with a suitable phosphate source such as (NH4)H2PO4. This oxide transforms into a thermodynamically more stable phase with a spinel structure on soaking in an aqueous medium. The oxide residue has a nanoparticulate morphology as revealed by the Scherrer broadening of the Bragg reflections as well as by electron microscopy. This work shows that the hydroxide reconstruction reaction and spinel formation are competing reactions. Suppression of the former catalyzes spinel formation as the excess free energy of the metastable oxide residue is unlocked to promote the diffusion of Mg2+ ions from octahedral to tetrahedral sites, which is the essential precondition to the formation of a normal spinel. This reaction taking place as it does at ambient temperature and in solution helps in the retention of a nanostructured morphology for the spinel. Another way of stabilizing the oxide is by incorporating the thermally stable borate anion into the LDH. This paves the way for an in situ reaction between the cations of the host LDH and the borate guest. The in situ reaction directly leads to the formation of an oxide with a spinel structure.     

DFT Study of Polymorphism in Al(OH)3: A Structural Synthon Approach

All the known polymorphs of Al(OH)₃ comprise a stacking of charge neutral layers having the composition [Al_2/3□_1/3(OH)₂] (□: cation vacancy) and designated by the symbol P. Employing a single Al(OH)₃ layer (layer group p12₁/a1) as a structural synthon, the energy profile computed for the translations of P and $\bar{P}$ ($\bar{P}$ : mirror image of P) layers relative to each other within a bilayer model, not only show minima corresponding to the four known polymorphs of Al(OH)₃ but also predict three new polymorphs with energy minima at the stacking vectors (7/10, 5/18, 1) (polymorph B1), (1/2, 0, 1) (polymorph B2) and (2/5, 1/9, 1) (polymorph B4). Of these B1 and B2 are 0.30 eV and 0.23 eV below the energy of bayerite (B3), but 0.30 eV and 0.37 eV above the global minimum which corresponds to gibbsite. B4 is only 0.08 eV above the energy of bayerite. This quantitative structural synthon approach offers B1, B2, and B4 as legitimate targets for future synthetic efforts.     

Binding of the ionic liquid cation 1-alkyl-3-methylimidazolium to p-tetranitrocalix[4]arene probed by fluorescent indicator displacement

Acridine orange (AO) was used as a fluorescent probe molecule to study the encapsulation of an alkylimidazolium cation from a water-soluble ionic liquid (IL) within two cavitand species, p-tetranitrocalix[4]arene (1) and calix[4]resorcinarene (2), both in alkaline aqueous media. The addition of IL to the preformed [1·AO] adduct resulted in significantly increased fluorescence due to the expulsion of AO from the inclusion complex to the aqueous phase by competitive recognition of the 1-alkyl-3-methylimidazolium cation ([C(n)mim](+), n = 4 and 6) by 1. Conversely, the fluorescence signal dropped upon the addition of IL to the [2·AO] host-guest complex due to unfavorable binding between [C(n)mim](+) and 2. The formation of these postulated adducts is corroborated using ab initio calculations, which also provide evidence for the location of [bmim](+) at the lower external rim of [2·AO], providing an explanation for the observed luminescence quenching in the latter case. These results point to a number of different paths for exploration, ranging from the fluorescence monitoring of IL contamination in groundwater to the "daisy chaining" of macrocyles toward supramolecular ionic networks. They also broadly encourage the exploration of ILs in host-guest-based optical and mass spectrometric sensory systems.