Interaction studies of cysteine with Li+, Na+, K+, Be2+, Mg2+, and Ca2+ metal cation complexes

The coordination geometries, electronic features, metal ion affinities, entropies, and the energetics of Li⁺, Na⁺, K⁺, Be²⁺, Mg²⁺, and Ca²⁺ metal cations with different possible conformations of cysteine complexes were studied. The complexes were optimized using density functional theory (B3LYP) and second order Moller–Plesset Perturbation (MP2) theory methods using 6‐311 + +G** basis set. The interactions of the metal cations at different nucleophilic sites of cysteine conformations were considered after a careful selection among several binding sites. All the metal cations coordinate with cysteine in a tridentate manner and also the most preferred position for the interaction. It is found that, the overall structural parameters of cysteine are not altered by metal ion substitution, but, the metal ion‐binding site has undergone a noticeable change. All the complexes were characterized by an electrostatic interaction between ligand and metal ions that appears slightly more pronounced for lithium and beryllium metal complexes. The metal ion affinity (MIA) and basis set superposition error (BSSE) corrected interaction energy were also computed for all the complexes. The effect of metal cations on the infrared (IR) stretching vibrational modes of amino N? H bond, side chain thiol group S? H bond, hydroxyl O? H bond, and Carbonyl C?O bond in cysteine molecules have also been studied. The nature of the metal ion‐ligand bond and the coordination properties were examined using natural bond order (NBO) at bond critical point (electron density and their Laplacian of electron density) through Atoms in Molecules (AIM) analyses. Copyright © 2010 John Wiley & Sons, Ltd.     

Comparative docking and CoMFA analysis of curcumine derivatives as HIV-1 integrase inhibitors

The docking studies and comparative molecular field analysis (CoMFA) were performed on highly active molecules of curcumine derivatives against 3′ processing activity of HIV-1 integrase (IN) enzyme. The optimum CoMFA model was selected with statistically significant cross-validated r² value of 0.815 and non-cross validated r ² value of 0.99. The common pharmacophore of highly active molecules was used for screening of HIV-1 IN inhibitors. The high contribution of polar interactions in pharmacophore mapping is well supported by docking and CoMFA results. The results of docking, CoMFA, and pharmacophore mapping give structural insights as well as important binding features of curcumine derivatives as HIV-1 IN inhibitors which can provide guidance for the rational design of novel HIV-1 IN inhibitors.     

Hydrogen‐bonded complexes of nicotine with simple alcohols

Ab initio and density functional theory studies have been performed on the hydrogen‐bonded complexes of neutral and protonated nicotine with ethanol, methanol, and trifluromethanol to explore their relative stability in a systematic way. Among all the hydrogen‐bonded nicotine complexes considered here, protonated forms in nicotine–ethanol and nicotine–methanol, and neutral form in nicotine–trifluromethanol complexes have been found to be the most stable. In the former two complexes, the proton attached to the pyrrolidine nitrogen acts as a strong hydrogen bond donor, whereas the pyrrolidine nitrogen atom acts as a hydrogen bond acceptor in the latter case. Neutral complex of nicotine with trifluromethanol has been found to possess a very short hydrogen bond (1.57 Å) and basis set superposition error corrected hydrogen bond energy value of 19 kcal/mol. The nature of the various hydrogen bonds formed has been investigated through topological aspects using Bader's atoms in molecules theory. From the calculated topological results, excellent linear correlation is shown to exist among the hydrogen bond length, electron density, and its Laplacian at the bond critical points for all the complexes considered. The natural bond orbital analysis has been carried out to investigate the charge transfer in the nicotine alcohol complexes. In contrast to the blue shifting behavior that is generally exhibited by other C? H···O hydrogen bonds involving sp³ carbon atom, the C? H···O hydrogen bond in the protonated nicotine–ethanol and methanol complexes has been found to be proper with red shifting in nature. © 2011 Wiley Periodicals, Inc.     

Measurement of sensitivities for the thermal recording of laser beams

A simple technique for determining the energy sensitivities for the thermographic recording of laser beams is described. The principle behind this technique is that, if a laser beam with a known spatial distribution such as a Gaussian profile is used for imaging, the radius of the thermal image formed depends uniquely on the intensity of the impinging beam. Thus by measuring the radii of the images produced for different incident beam intensities the minimum intensity necessary (that is, the threshold) for thermographic imaging is found. The diameter of the laser beam can also be found from this measurement. A simple analysis based on the temperature distribution in the laser heated material shows that there is an inverse square root dependence on pulse duration or period of exposure for the energy fluence of the laser beam required, both for the threshold and the subsequent increase in the size of the recording. It has also been shown that except for low intensity, long duration exposure on very low conductivity materials, heat losses are not very significant.     

X-ray,electrical conductivity,magnetic and infrared studies of the system Co2−x Ge1−x Fe2x O4

X-ray, electrical conductivity, magnetic hysteresis and IR studies for the system Co_2−x Ge_1−x Fe_2x O₄ were carried out. All the compounds, 0⩽x⩽1, showed cubic symmetry. X-ray intensity calculations, magnetic hysteresis measurements and IR studies indicated the presence of Ge⁴⁺ at tetrahedral, Co²⁺ at octahedral and Fe³⁺ at both the sites. The activation energy and threshold frequency decreased with increasing value ofx. The compounds withx⩽0.5 arep-type and those withx⩾0.75 aren-type semiconductors. Magnetic hysteresis indicated that all the compounds are ferrimagnetic except forx=0 which is antiferromagnetic. The shapes of χ/χ _i vsT plots, highH _c values andJ _R/J_s ratios showed that all the compounds exceptx=0 exhibit single-domain behaviour. Curie temperature,T _c increased with increasing Fe³⁺ ions. The probable ionic configuration for the system is suggested as Ge _1−x ⁴⁺ Fe _x ³⁺ [co _2−x ²⁺ Fe _x ³⁺ ]O ₄ ²⁻ .     

Is corannulene a better diene or dienophile? A DFT analysis

Diels Alder reactivity of corannulene has been probed using density functional theory (DFT) at B3LYP/6‐31G^* level by employing it both as a diene and a dienophile in cycloaddition with ethylene and 1,3‐butadiene as typical partners. Computations reveal that corannulene acts better as a dienophile than as a diene and as a dienophile it undergoes normal electron demand type addition with 1,3‐butadiene, and as a diene corannulene undergoes inverse electron demand type addition with ethylene. When employed as a dienophile the addition takes place preferentially in the rim position than in the spoke position due to strong steric and electronic reasons. Further in the rim addition rim exo approach is favored kinetically and thermodynamically. As a diene, corannulene shows regioselectivity for rim–spoke addition over spoke–spoke addition. Concerted type cycloadditions have been studied and the reactions are seen to take place preferentially on the convex face. The effect of substituents in butadiene on the reactivity and the reaction of butadiene–pentaindenocorannulene (an extended corannulene) system has been investigated for the most favorable rim exo positions. Copyright © 2007 John Wiley & Sons, Ltd.     

Growth and characterization of 2-amino-5-chlorobenzophenone (2A-5CB) single crystals

Organic nonlinear optical single crystals of 2-amino-5-chlorobenzophenone (2A-5CB) were grown in ethanol by slow solvent evaporation technique. The grown crystals were characterized by single-crystal XRD, FTIR, FT-Raman and UV–vis–NIR techniques. The UV–vis–NIR spectrum ascertains the cut-off wavelength of the sample as 390 nm. The powder second harmonic generation (SHG) technique reveals that 2A-5CB crystal has its SHG efficiency nearly three times that of KDP. The dielectric response of the sample was studied in the frequency region of 50 Hz–1 MHz at varying temperatures. The photoconductivity studies indicate that the 2A-5CB crystal exhibits negative photoconductivity. TGA–DTA studies confirm the melting point of the sample as 101.5 °C.     

Isomerization study of C5H5NO molecules

The complex potential energy surface (PES) for the isomerization of C₅H₅NO species, including 18 isomers and 23 interconversion transition states, is probed theoretically at the B3LYP/6‐311++G(d,p) and MP2//B3LYP/6‐311++G(d,p) levels of theory. The geometries and relative energies for various stationary points were determined. The zero‐point vibrational energy (ZPVE) corrections have been made to calculate the reliable energy. We predicted a six‐membered ring structure as a global minima isomer I, which is 118.49 and 131.48 kcal · mol^?1 more stable than the least stable, four‐ and three‐membered ring isomer VIII at B3LYP and MP2//B3LYP levels of theory, respectively. The isomers and interconversion transition states have verified by frequency calculation. The intrinsic reaction coordinates (IRC) calculations have been performed to confirm that each transition state is linked by the desired reactants and products. The isomer stability has been studied using relative energies, chemical hardness, and chemical potential. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Pharmacokinetic Analysis of Ursolic Acid in Alstonia scholaris R. Br. by High-Performance Thin-Layer Chromatography

JPC – Journal of Planar Chromatography – Modern TLC - A simple and rapid high-performance thin-layer chromatographic method has been established and validated for determination of...     

Studies on structure and conformational stability of free canonical 2′‐deoxyribonucleosides: Approximate SCC‐DFTB and LMP2 methods

The molecular structure of free canonical 2′‐deoxyribonucleosides have been studied by applying the electron‐correlated local second‐order Møller–Plesset perturbation theory (LMP2) and self‐consistent‐charge density‐functional tight‐binding (SCC‐DFTB) methods. The variation of structural parameters for C2, C3 endo and exo conformations, and anti, syn orientation of the base unit with furanose ring have been discussed. The relative energies have been calculated for the anti and syn conformations of dT, dC, dG, and dA. Conformational analysis has been performed using the results of the LMP2 and SCC‐DFTB methods. Chemical hardness and chemical potential have been used to study the conformational stability of the conformers. The maximum hardness principle is obeyed for the furanose ring conformations and not for the nucleosides. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2004