Dewetting pathways and morphology of unstable thin liquid bilayers

Three-dimensional long-wave nonlinear analysis of the instabilities engendered by van der Waals forces in a thin (<100 nm) viscous bilayer resting on a rigid substrate is presented. The bilayers are classified based on the macroscopic dewetting behavior of the films, and the three-dimensional morphological evolutions of the films are studied in each case. The dewetting of the bilayers is initiated by one of the two basic modes at the interfaces: in-phase "bending" and out-of-phase "squeezing". We show that the thicknesses, surface energies, and viscosities of the films have significant influence on the mode selection, pathway, of dewetting, and the final morphology of dewetting. Different equilibrium morphologies are obtained by tuning the nature and the strength of the intermolecular forces present at the films, which include: (i) an array of channels and ridges in the lower layer with the upper liquid embedded inside the channels, (ii) islands in the lower layer with the upper layer embedded in the interstitial spaces, and (iii) the lower layer droplets encapsulated by the upper layer.     

A simple scanning semiconductor diode laser source and its application in wavelength modulation spectroscopy around 825 nm

A very simple and inexpensive tunable semiconductor diode laser controller is designed for stable operation of the diode laser. The diode laser controller is stable within +/−8 μA and +/−10 mK, respectively. The noise spectrum of the current controller is studied by FFT analysis. We have used our home-made diode laser system in a tunable diode laser absorption spectrometer (TDLAS) to probe weak overtone transitions of water vapour molecule. The diode laser wavelength is coarsely tuned by changing the operating temperature to probe (2, 1, 1)←(0, 0, 0) band overtone transitions of water vapour within 818–835 nm. To demonstrate line shape study, seven transitions are scanned by ramping the drive current of the diode laser (at constant operating temperature) under different perturber (laboratory air) pressures within the sample cell. A balanced detector and a lock-in amplifier are used for phase sensitive detection purpose. Small current modulation amplitude, balanced detection and proper adjustment of the lock-in amplifier help to obtain a S/N ratio ranging from 100 to 7 using a small sample path length of 1.5 m. Experimentally obtained derivative spectrum is numerically integrated to reveal the original line shape and fitted with a nonlinear least squares fitting program to extract air broadening coefficients and line strength parameters. The spectroscopic line parameters are compared with the results from HITRAN database.     

Low-frequency vibrational spectrum of water in the hydration layer of a protein: a molecular dynamics simulation study

An atomistic molecular dynamics simulation has been carried out to understand the low-frequency intermolecular vibrational spectrum of water present in the hydration layer of the protein villin headpiece subdomain or HP-36. An attempt is made to explore how the heterogeneous rigidity of the hydration layers of different segments (three alpha helices) of the protein, strength of the protein-water hydrogen bonds, and their differential relaxation behavior influence the distribution of the intermolecular vibrational density of states of water in the hydration layers. The calculations revealed that compared to bulk water these bands are nonuniformly blue-shifted for water near the helices, the extent of shifts being more pronounced for water molecules hydrogen bonded to the protein residues. It is further noticed that the larger blue shift observed for the water molecules hydrogen bonded to helix 2 residues correlates excellently with the slowest structural relaxation of these hydrogen bonds. These results can be verified by suitable experimental measurements.     

Microwave‐Induced Stereocontrol of β‐Lactam Formation with an N‐Benzylidene‐9,10‐dihydrophenanthren‐3‐amine via Staudinger Cycloaddition

The synthesis of 3‐substituted 4‐phenyl‐1‐(9,10‐dihydrophenanthren‐3‐yl)azetidin‐2‐ones was achieved following Staudinger cycloaddition under microwave‐induced conditions. The stereoselectivity of β‐lactam formation depended on the power level of the microwave irradiation used in the experiments.     

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications

Protein function prediction is one of the central problems in computational biology. We present a novel automated protein structure-based function prediction method using libraries of local residue packing patterns that are common to most proteins in a known functional family. Critical to this approach is the representation of a protein structure as a graph where residue vertices (residue name used as a vertex label) are connected by geometrical proximity edges. The approach employs two steps. First, it uses a fast subgraph mining algorithm to find all occurrences of family-specific labeled subgraphs for all well characterized protein structural and functional families. Second, it queries a new structure for occurrences of a set of motifs characteristic of a known family, using a graph index to speed up Ullman’s subgraph isomorphism algorithm. The confidence of function inference from structure depends on the number of family-specific motifs found in the query structure compared with their distribution in a large non-redundant database of proteins. This method can assign a new structure to a specific functional family in cases where sequence alignments, sequence patterns, structural superposition and active site templates fail to provide accurate annotation.     

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development

Protein function prediction is one of the central problems in computational biology. We present a novel automated protein structure-based function prediction method using libraries of local residue packing patterns that are common to most proteins in a known functional family. Critical to this approach is the representation of a protein structure as a graph where residue vertices (residue name used as a vertex label) are connected by geometrical proximity edges. The approach employs two steps. First, it uses a fast subgraph mining algorithm to find all occurrences of family-specific labeled subgraphs for all well characterized protein structural and functional families. Second, it queries a new structure for occurrences of a set of motifs characteristic of a known family, using a graph index to speed up Ullman’s subgraph isomorphism algorithm. The confidence of function inference from structure depends on the number of family-specific motifs found in the query structure compared with their distribution in a large non-redundant database of proteins. This method can assign a new structure to a specific functional family in cases where sequence alignments, sequence patterns, structural superposition and active site templates fail to provide accurate annotation.     

Cationic Crown Ether Complexes of Germanium(II)

Fit for a king : Cationic complexes of Ge^II can be prepared by using crown ethers to stabilize and protect the germanium center. Three different crown ethers were employed: [12]crown‐4 (see structure, Ge teal, O red, C gray), [15]crown‐5, and [18]crown‐6. The structures of the cationic complexes depend on the cavity size of the crown ether and on the substituent on germanium.

     

Influence of surface mass transfer on mixed convection flows over non-isothermal horizontal flat plates

Non-similar solution of a steady mixed convection flow over a horizontal flat plate in the presence of surface mass transfer (suction or injection) is obtained when there is power-law variation in surface temperature. The surface temperature is assumed to vary as a power of the axial coordinate measured from the leading edge of the plate. A non-similar mixed convection parameter is considered which covers the whole convection regime, namely from pure free convection to pure forced convection. Numerical results are reported here to account the effects of Prandtl number, surface temperature, surface mass transfer parameter (suction or injection) on velocity and temperature profiles, and skin friction and heat transfer coefficients.     

Tuning of nonvolatile bipolar memristive switching in Co(III) polymer with an extended azo aromatic ligand

We have fabricated a unique memristive device by molecular engineering and demonstrated that the leakage current tuning in the device is 100 times more efficient than that in a standard device. Molecular analogs of the memristive matrices used here are an electrochemically active conjugated Co(III) polymer (CP) and a nonconjugated Co(III) polymer (NCP), which have been synthesized in good yield and characterized by (1)H NMR spectroscopy. Redox switching of an organic-metallic hybrid polymer generates bistable states with a large ON/OFF ratio that supports random flip-flops for several hours. Thus, we provide a synthetic solution to leakage current restriction, one of the fundamental problems faced when fabricating state-of-the-art electronic devices.     

α/γ(4)-Hybrid peptide helices: synthesis, crystal conformations and analogy with the α-helix

Synthesis, crystal conformations of α/γ(4)-hybrid peptide helices containing proteinogenic amino acid side-chains, and the analogy with the α-helix are reported. Results suggest that α/γ(4)-hybrid peptides adopted helical conformations with 12-membered H-bond pseudocycles in single crystals.