Formation and spectroscopy of a tryptophan radical containing peptide in the gas phase

A doubly deprotonated tryptophan containing peptide was electrosprayed and isolated in an ion trap. UV excitation on this peptide leads to electron detachment and to the formation of an indolyl radical. The photogenerated radical was fragmented by a second laser. The visible spectrum of the gas-phase neutral tryptophan radical containing peptide has been recorded and constitutes a benchmark for calculations and optical measurements.     

Photoelectron spectroscopy of gramicidin polyanions: competition between delayed and direct emission

We present the first photoelectron (PE) spectra of polypeptide polyanions. Combining PE spectroscopy and mass spectrometry provides a direct measurement of the stability of the polyanions with respect to electron detachment and of the repulsive energy between excess charges. The second electron affinity of gramicidin was found to amount to 2.35 +/- 0.15 eV, and the value of the repulsive Coulomb barrier was estimated to be 0.5 +/- 0.15 eV. The spectra are interpreted as resulting from a competition between delayed and direct emission.     

How Crystal Symmetry Dictates Non-Local Vibrational Circular Dichroism in the Solid State

Solid-State Vibrational Circular Dichroism (VCD) can be used to determine the absolute structure of chiral crystals, but its interpretation remains a challenge in modern spectroscopy. In this work, we investigate the effect of a twofold screw axis on the solid-state VCD spectrum in a combined experimental and theoretical analysis of P2₁ crystals of (S)-(+)-1-indanol. Even though the space group is achiral, a single proper symmetry operation has an important impact on the VCD spectrum, which reflects the supramolecular chirality of the crystal. Distinguishing between contributions originating from molecular chirality and from chiral crystal packing, we find that while IR absorption hardly depends on the symmetry of the space group, the situation is different for VCD, where completely new non-local patterns emerge. Understanding the two underlying mechanisms, namely gauge transport and direct coupling, will help to use VCD to distinguish polymorphic forms.     

Microsolvation effects on the optical properties of crystal violet

We present a joint experimental and theoretical study of the photoabsorption and photodissociation behavior of crystal violet, that is, the tris[p-(dimethylamino)phenyl]methyl cation. The photodissociation spectra of isolated and microsolvated crystal violet have been measured. A single band is observed for the bare cation. This is in good agreement with the calculated vibronic absorption spectrum based on time-dependent density functional theory calculations. The interaction of crystal violet with a single water molecule shifts and broadens the photodissociation spectrum, so that it approaches the spectrum obtained in solution. Theoretical calculations of the structure of the complex suggest that the shift in the absorption spectrum originates from a water molecule bonding with the central carbon atom of crystal violet.     

Heterometallic [Mn5-Ln4] single-molecule magnets with high anisotropy barriers

The reaction of [Mn6O2(Piv)(10)(4-Me-py)(2.5)(PivH)(1.5)] (1) (py: pyridine, Piv: pivilate) with N-methyldiethanolamine (mdeaH2) and Ln(NO3)3 x 6 H2O in MeCN leads to a series of nonanuclear compounds [Mn5Ln4(O)6(mdea)2(mdeaH)2(Piv)6(NO3)4(H2O)2]2 MeCN (Ln=Tb(III) (2), Dy(III) (3), Ho(III) (4), Y(III) (5)). Single-crystal X-ray diffraction shows that compounds 2-5 are isostructural, with the central core composed of two distorted {Mn(IV)Mn(III)Ln2O4} cubanes sharing a Mn(IV) vertex, representing a new heterometallic 3d-4f motif for this class of ligand. The four new compounds display single-molecule magnet (SMM) behaviour, which is modulated by the lanthanide ion used. Moreover, the values found for Delta(eff) and tau(o) for 3 of 38.6 K and 3.0 x 10(-9) s respectively reveal that the complex 3 exhibits the highest energy barrier recorded so far for 3d-4f SMMs. The slow relaxation of the magnetisation for 3 was confirmed by mu-SQUID measurements on an oriented single crystal and the observation of M versus H hysteresis loops below 1.9 K.     

Visible Multiphoton Dissociation of Chromophore-Tagged Peptides

The visible photodissociation mechanisms of QSY7-tagged peptides of increasing size have been investigated by coupling a mass spectrometer and an optical parametric oscillator laser beam. The experiments herein consist of energy resolved collision- and laser-induced dissociation measurements on the chromophore-tagged peptides. The results show that fragmentation occurs by similar channels in both activation methods, but that the branching ratios are vastly different. Observation of a size-dependent minimum laser pulse energy required to induce fragmentation, and collisional cooling rates in time resolved experiments show that laser-induced dissociation occurs through the absorption of multiple photons by the chromophore and the subsequent heating through vibrational energy redistribution. The differences in branching ratio between collision- and laser-induced dissociation can then be understood by the highly anisotropic energy distribution following absorption of a photon.

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Action-FRET of a Gaseous Protein

Mass spectrometry is an extremely powerful technique for analysis of biological molecules, in particular proteins. One aspect that has been contentious is how much native solution-phase structure is preserved upon transposition to the gas phase by soft ionization methods such as electrospray ionization. To address this question—and thus further develop mass spectrometry as a tool for structural biology—structure-sensitive techniques must be developed to probe the gas-phase conformations of proteins. Here, we report Förster resonance energy transfer (FRET) measurements on a ubiquitin mutant using specific photofragmentation as a reporter of the FRET efficiency. The FRET data is interpreted in the context of circular dichroism, molecular dynamics simulation, and ion mobility data. Both the dependence of the FRET efficiency on the charge state—where a systematic decrease is observed—and on methanol concentration are considered. In the latter case, a decrease in FRET efficiency with methanol concentration is taken as evidence that the conformational ensemble of gaseous protein cations retains a memory of the solution phase conformational ensemble upon electrospray ionization.

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Deciphering second harmonic generation signals

Second harmonic generation (SHG) has emerged as one of the most powerful techniques used to selectively monitor surface dynamics and reactions for all types of interfaces as well as for imaging non-centrosymmetric structures, although the molecular origin of the SHG signal is still poorly understood. Here, we present a breakthrough approach to predict and interpret the SHG signal at the atomic level, which is freed from the hyperpolarisability concept and self-consistently considers the non-locality and the coupling with the environment. The direct ab initio method developed here shows that a bulk quadrupole contribution significantly overwhelms the interface dipole term in the purely interfacial induced second-order polarisation for water/air interfaces. The obtained simulated SHG responses are in unprecedented agreement with the experimental signal. This work not only paves the road for the prediction of SHG response from more complex interfaces of all types, but also suggests new insights in the interpretation of the SHG signal at a molecular level. In particular, it highlights the modest influence of the molecular orientation and the high significance of the bulk quadrupole contribution, which does not depend on the interface, in the total experimental response.

Second harmonic generation is one of the most powerful techniques used to selectively probe interfaces of all types. The direct ab initio method developed here allows predicting the signal and highlights the importance of local and non-local effects.     

Fluorescence and Nonlinear Optical Response of Graphene Quantum Dots Produced by Pulsed Laser Irradiation in Toluene

Graphene quantum dots (GQDs), the zero dimensional (0D) single nanostructures, have many exciting technological applications in diversified fields such as sensors, light emitting devices, bio imaging probes, solar cells, etc. They are emerging as a functional tool to modulate light by means of molecular engineering due to its merits, including relatively low extend of loss, large outstretch of spatial confinement and control via doping, size and shape. In this article, we present a one pot, facile and ecofriendly synthesis approach for fabricating GQDs via pulsed laser irradiation of an organic solvent (toluene) without any catalyst. It is a promising synthesis choice to prepare GQDs due to its fast production, lack of byproducts and further purification, as well as the control over the product by accurate tuning of laser parameters. In this work, the second (532 nm) and third harmonic (355 nm) wavelengths of a pulsed nanosecond Nd:YAG laser have been employed for the synthesis. It has been found that the obtained GQDs display fluorescence and is expected to have potential applications in optoelectronics and light-harvesting devices. In addition, nonlinear optical absorption of the prepared GQDs was measured using the open aperture z-scan technique (in the nanosecond regime). These GQDs exhibit excellent optical limiting properties, especially those synthesized at 532 nm wavelength.