Vesicle behavior: in search of explanations

In this paper we will present a series of experiments in the general field of surfactant aggregates and, in particular, in vesicle chemistry, which have found no definitive explanation until now. These experiments concern vesicle self-reproduction (in particular, the so-called matrix effect); the interaction between vesicle and RNA, where RNA appears capable of discriminating between vesicles differing slightly in size; the fusion of oppositely charged vesicles, which brings about unexpected behavior of size distribution; and some aspects of local concentration inside vesicles, which still lack clarification in terms of local versus overall concentration. The theoretical and experimental implications of this not yet understood behavior will be discussed, emphasizing that progress in the field must face the difficulty of applying thermodynamics to these kinetically trapped systems, and the general difficulty of understanding how kinetic and thermodynamic factors interplay with each other.     

Application of partial least squares discriminant analysis and variable selection procedures: a 2D-PAGE proteomic study

2D gel electrophoresis is a tool for measuring protein regulation, involving image analysis by dedicated software (PDQuest, Melanie, etc.). Here, partial least squares discriminant analysis was applied to improve the results obtained by classic image analysis and to identify the significant spots responsible for the differences between two datasets. A human colon cancer HCT116 cell line was analyzed, treated and not treated with a new histone deacetylase inhibitor, RC307. The proteins regulated by RC307 were detected by analyzing the total lysates and nuclear proteome profiles. Some of the regulated spots were identified by tandem mass spectrometry. The preliminary data are encouraging and the protein modulation reported is consistent with the antitumoral effect of RC307 on the HCT116 cell line. Partial least squares discriminant analysis coupled with backward elimination variable selection allowed the identification of a larger number of spots than classic PDQuest analysis. Moreover, it allows the achievement of the best performances of the model in terms of prediction and provides therefore more robust and reliable results. From this point of view, the multivariate procedure applied can be considered a good alternative to standard differential analysis, also taking into account the interdependencies existing among the variables.     

Effects of proximity on the relaxation dynamics of flindersine and 6(5H)-phenanthridinone

The role played by the carbonyl group in the antenna system of a naturally occurring photochromic chromene, flindersine (FL), has been experimentally investigated and compared with that of a carbonyl group present in a structurally related unreactive heterocyclic compound, 6(5H)-phenanthridinone (PH). Through stationary and time-resolved absorption and emission techniques, the excited-state relaxation dynamics after UV irradiation were determined for FL and PH. The presence of a carbonyl group in both compounds entails the existence of two close-lying, strongly coupled electronic excited states, having n,pi* and pi,pi* character, respectively. Their coupling can be modulated by a careful choice of the solvent proticity and temperature. Moreover, in the case of strong coupling between the n,pi* and pi,pi* states, we have proved that the relaxation dynamics can involve transitions in which the upper of the coupled states acts as an intermediate for radiationless decay, bypassing the lowest emissive state, whereby the fluorescence quantum yield becomes a function of the excitation wavelength.     

Relaxation properties of porphyrin, diprotonated porphyrin, and isoelectronic tetraoxaporphyrin dication in the S2 state

The fluorescence spectra of unsubstituted porphyrin (H2P), diprotonated porphyrin (H4P2+), and isoelectronic tetraoxaporphyrin dication (TOxP2+) have been measured in solution at room temperature. The S2-->S0 fluorescence has been observed, much more intense for TOxP2+ than for H4P2+ and H2P. In the TOxP2+ case, the S2-->S0 fluorescence spectrum is remarkably sharp and shows an excellent mirror symmetry with respect to S0-->S2 absorption. On the contrary, the spectra of H4P2+ and H2P are shifted and more extended with respect to the absorption counterparts. The differences have been attributed primarily to the change of the equilibrium geometry upon excitation, larger in H2P and H4P2+ than in TOxP2+ and in the case of H4P2+ to the nonplanar conformation of the macrocycle. Also the S1-->S0 spectra of H2P, H4P2+, and TOxP2+ have been measured and more qualitatively discussed. The S1 and S2 fluorescence decays have been observed for H4P2+ and TOxP2+ exciting with ultrashort pulses. The S2 lifetime of TOxP2+ is of the order of the temporal resolution of our experimental apparatus, whereas that of H4P2+ is shorter. The S2-->S0 quantum yield of TOxP2+ has been estimated to be 0.035, approximately 3 orders of magnitude higher than that of H4P2+. It is proposed on the basis of ab initio model calculations that excited states of the H4P2+(CF3COO-)2 complex with charge-transfer character are responsible of the increased extension of the S2-->S0 spectrum with respect to that of H2P.     

The application of bis(oxazoline) ligands in the catalytic enantioselective methallylation of aldehydes

A series of symmetric and non-symmetric bis(oxazoline) ligands were applied in the Nozaki-Hiyama-Kishi methallylation of a range of aromatic and aliphatic aldehydes. A non-symmetrical ligand with tert-butyl/benzyl-substituted oxazolines provided the highest enantioselectivity of 99.5% for the methallylation of benzaldehyde.     

Copper-promoted enantioselective Reformatsky-type reaction with ketones

Controlled living polymerization of a broad range of monomers is a radical process known as ATRP (atom transfer radical polymerization) and is mediated by a variety of metals. A complex of copper has been found to be the most efficient catalyst, with a copper(I)/copper(II) catalytic cycle. The radical, enantioselective catalytic Reformatsky reaction mediated by Me₂Zn can be efficiently promoted by copper(I) complexes avoiding the use of other promoters such as air and oxidant, giving more reproducible and affordable conditions. The CuCN-mediated enantioselective addition of ethyliodoacetate to functionalized ketones is described in this paper.     

Convexity,smoothness and moduli

Bana? defined a modulus for Banach spaces which has appeared in the literature, but not studied in details until now.     

Chicken egg yolk cytoplasmic proteome,mined via combinatorial peptide ligand libraries

The use of combinatorial peptide ligand libraries (CPLLs), containing hexapeptides terminating with a primary amine, or modified with a terminal carboxyl group, or with a terminal tertiary amine, allowed discovering and identifying a large number of previously unreported egg yolk proteins. Whereas the most comprehensive list up to date [K. Mann, M. Mann, Proteomics, 8 (2008) 178–191] tabulated about 115 unique gene products in the yolk plasma, our findings have more than doubled this value to 255 unique protein species. From the initial non-treated egg yolk it was possible to find 49 protein species; the difference was generated thanks to the use of the three combined CPLLs. The aberrant behaviour of some proteins, upon treatment via the CPLL method, such as proteins that do not interact with the library, is discussed and evaluated. Simplified elution protocols from the CPLL beads are taken into consideration, of which direct elution in a single step via sodium dodecyl sulphate desorption seems to be quite promising. Alternative methods are suggested. The list of egg yolk components here reported is by far the most comprehensive at present and could serve as a starting point for isolation and functional characterization of proteins possibly having novel pharmaceutical and biomedical applications.