Iron-catalyzed C2-C3 bond cleavage of phenylpyruvate with O2: insight into aliphatic C-C bond-cleaving dioxygenases

Iron(II)-phenylpyruvate complexes of tetradentate tris(6-methyl-2-pyridylmethyl)amine (6-Me3-TPA) and tridentate benzyl bis(2-quinolinylmethyl)amine (Bn-BQA) were prepared to gain insight into C-C bond cleavage catalyzed by dioxygenase enzymes. The complexes we have prepared and characterized are [Fe(6-Me3-tpa)(prv)][BPh4] (1), [Fe2(6-Me3-tpa)2(pp)][(BPh4)2] (2), and [Fe2(6-Me3-tpa)2(2'-NO2-pp)][(BPh4)2] (3), [Fe(6-Me3-tpa)(pp-Me)][BPh4] (4), [Fe(6-Me3-tpa)(CN-pp-Et)][BPh4] (5), and [Fe(Bn-bqa)(pp)] (8), in which PRV is pyruvate, PP is the enolate form of phenylpyruvate, 2'-NO2-PP is the enolate form of 2'-nitrophenylpyruvate, PP-Me is the enolate form of methyl phenylpyruvate, and CN-PP-Et is the enolate form of ethyl-3-cyanophenylpyruvate. The structures of mononuclear complexes 1 and 5 were determined by single-crystal X-ray diffraction. Both the PRV ligand in 1 and the CN-PP-Et ligand in 5 bind to the iron(II) center in a bidentate manner and form 5-membered chelate rings, but the alpha-keto moiety is in the enolate form in 5 with concomitant loss of a C-H(beta) proton. The PP ligands of 2, 3, 4, and 8 react with dioxygen to form benzaldehyde and oxalate products, which indicates that the C2-C3 PP bond is cleaved, in contrast to cleavage of the C1-C2 bond previously observed for complexes that do not contain alpha-ketocarboxylate ligands in the enolate form. These reactions serve as models for metal-containing dioxygenase enzymes that catalyze the cleavage of aliphatic C-C bonds.     

Protonation of some cyclic triphosphenium ions

Several cyclic triphosphenium ions of various ring sizes have been successfully protonated to form the corresponding triphosphane di‐ium dications, either by a ^tBuCl/AlCl₃ mixture and/or by triflic acid. The latter reagent appears to be harsher, however, sometimes leading to decomposition. The new dications have been identified in solution by ³¹P NMR spectroscopy; recording the spectra proton coupled as well as decoupled has enabled ¹J_PH as well as ¹J_PP to be evaluated in most cases. The protonated derivatives of three compounds could not be observed, with only decomposition products being detected. In the case of the triphosphenium ion derived from bis‐1,4‐diphenylphosphinobutane (dppb), clear spectroscopic evidence for an intermediate in the decomposition process of the di‐ium dication has been obtained, enabling a plausible mechanism to be proposed. In addition, a novel triphosphorus‐containing trication with a norbornane‐like structure has been detected, and characterized by single crystal X‐ray diffraction, as a minor product from the protonation of the triphosphenium ion derived from cis‐bis‐1,2‐diphenylphosphinoethene (dppE). © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:447–452, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20124     

Structural unit analysis identifies lead series and facilitates scaffold hopping in combinatorial chemistry

Combinatorial chemistry and high-throughput screening technologies produce huge amounts of data on a regular basis. Sieving through these libraries of compounds and their associated assay data to identify appropriate series for follow-up is a daunting task, which has created a need for computational techniques that can find coherent islands of structure-activity relationships in this sea. Structural unit analysis (SUA) examines an entire data set so as to identify the molecular substructures or fragments that distinguish compounds with high activity from those with average activity. The algorithm is iterative and follows set heuristics in order to generate the structural units. It produces graphs that represent a set of units, which become SUA rules. Finding all of the input structures that match these graphs generates clusters. The Apriori algorithm for association rule mining is adapted to explore all of the combinations of structural units that define useful series. User-defined constraints are applied toward series selection and the refinement of rules. The significance of a series is determined by applying statistical methods appropriate to each data set. Application to the NCI-H23 (DTP Human Tumor Cell Line Screen) database serves to illustrate the process by which structural series are identified. An application of the method to scaffold hopping is then discussed in connection with proprietary screening data from a lead optimization project directed toward the treatment of respiratory tract infections at Bayer Healthcare. SUA was able to successfully identify promising alternative core structures in addition to identifying compounds with above-average activity and selectivity.     

Control of nanoparticle aggregation in aerogel hosts

Plasmonic aerogel containing 50 nm gold nanoparticles is made using a modified 2-step method that maintains control over the gel time while preventing nanoparticle aggregation. Strong narrow surface plasmon resonances verify that the nanoparticles are well dispersed within the silica matrix, and enable applications in sensing, SERS, nonlinear optics or plasmonic gain. Discrepancies between measured and simulated resonance wavelengths are attributed to the breakdown of the effective index approximation, due to the short-scale penetration of the resonance electric field into the host medium.     

Neutron emission from KSTAR Ohmically heated plasmas

An un-calibrated sensitive ³He detector was used to monitor the KSTAR neutron rate during Ohmically heated discharges. Neutrons were detected for every shot. If the neutrons were from D-D reactions then there should be a dependence on the ion temperature. We obtained ion temperature, electron density, Ohmic heating input power measurements, etc. from standard diagnostics. The study shows no observable dependence on the Ohmic power, ion temperature, or calculated source strength. It appears that the neutrons are from sources other than D-D reactions. The most probable source is high-energy runaway electrons.     

Synthesis and Confinement of Carbon Dots in Lysozyme Single Crystals Produces Ordered Hybrid Materials with Tuneable Luminescence

The synthesis and confinement of graphitic nanoparticles (carbon dots) in the nanoscale solvent channels of cross‐linked lysozyme single crystals is used to prepare novel biohybrid luminescent materials. Co‐sequestration of acridine orange within the biohybrid crystals from acidic or neutral solutions yields FRET‐mediated phosphors emitting white or green light, respectively. The results offer a route to new types of tuneable multicolour luminescent materials based on microcrystalline host–guest energy‐transfer systems.     

Characterization of a tricationic trigonal bipyramidal iron(IV) cyanide complex, with a very high reduction potential, and its iron(II) and iron(III) congeners

Currently, there are only a handful of synthetic S = 2 oxoiron(IV) complexes. These serve as models for the high-spin (S = 2) oxoiron(IV) species that have been postulated, and confirmed in several cases, as key intermediates in the catalytic cycles of a variety of nonheme oxygen activating enzymes. The trigonal bipyramidal complex [Fe(IV)(O)(TMG(3)tren)](2+) (1) was both the first S = 2 oxoiron(IV) model complex to be generated in high yield and the first to be crystallographically characterized. In this study, we demonstrate that the TMG(3)tren ligand is also capable of supporting a tricationic cyanoiron(IV) unit, [Fe(IV)(CN)(TMG(3)tren)](3+) (4). This complex was generated by electrolytic oxidation of the high-spin (S = 2) iron(II) complex [Fe(II)(CN)(TMG(3)tren)](+) (2), via the S = 5/2 complex [Fe(III)(CN)(TMG(3)tren)](2+) (3), the progress of which was conveniently monitored by using UV-vis spectroscopy to follow the growth of bathochromically shifting ligand-to-metal charge transfer (LMCT) bands. A combination of X-ray absorption spectroscopy (XAS), Mo?ssbauer and NMR spectroscopies was used to establish that 4 has a S = 0 iron(IV) center. Consistent with its diamagnetic iron(IV) ground state, extended X-ray absorption fine structure (EXAFS) analysis of 4 indicated a significant contraction of the iron-donor atom bond lengths, relative to those of the crystallographically characterized complexes 2 and 3. Notably, 4 has an Fe(IV/III) reduction potential of ～1.4 V vs Fc(+/o), the highest value yet observed for a monoiron complex. The relatively high stability of 4 (t(1/2) in CD(3)CN solution containing 0.1 M KPF(6) at 25 °C ≈ 15 min), as reflected by its high-yield accumulation via slow bulk electrolysis and amenability to (13)C NMR at -40 °C, highlights the ability of the sterically protecting, highly basic peralkylguanidyl donors of the TMG(3)tren ligand to support highly charged high-valent complexes.     

Electronic structure of aqueous borohydride: a potential hydrogen storage medium

Borohydride salts have been considered as good prospects for transportable hydrogen storage materials, with molecular hydrogen released via hydrolysis. We examine details of the hydration of sodium borohydride by the combination of X-ray absorption spectroscopy and first principles' theory. Compared to solid sodium borohydride, the aqueous sample exhibits an uncharacteristically narrow absorption feature that is shifted to lower energy, and ascribed to the formation of dihydrogen bonds between borohydride and water that weaken the boron-hydrogen covalent bonds. Water also acts to localize the highly excited molecular orbitals of borohydride, causing transitions to excited states with p character to become more intense and a sharp feature, uncharacteristic of tetrahedral molecules, to emerge. The simulations indicate that water preferentially associates with borohydride on the tetrahedral corners and edges.     

MALDI-MS imaging of lipids in ex vivo human skin

Lipidomics is a rapidly expanding area of scientific research and there are a number of analytical techniques that are employed to facilitate investigations. One such technique is matrix-assisted laser desorption ionisation (MALDI) mass spectrometry (MS). Previous MALDI-MS studies involving lipidomic investigation have included the analysis of a number of different ex vivo tissues, most of which were obtained from animal models, with only a few being of human origin. In this study, we describe the use of MALDI-MS, MS/MS and MS imaging methods for analysing lipids within cross-sections of ex vivo human skin. It has been possible to tentatively identify lipid species via accurate mass measurement MALDI-MS and also to confirm the identity of a number of these species via MALDI-MS/MS, in experiments carried out directly on tissue. The main lipid species detected include glycerophospholipids and sphingolipids. MALDI images have been generated at a spatial resolution of 150 and 30 μm, using a MALDI quadrupole time-of-flight Q-Star Pulsar-i ^TM (Applied Biosystems/MDS Sciex, Concord, ON, Canada) and a MALDI high-definition MS (HDMS) SYNAPT G2-HDMS^TM system (Waters, Manchester, UK), respectively. These images show the normal distribution of lipids within human skin, which will provide the basis for assessing alterations in lipid profiles linked to specific skin conditions e.g. sensitisation, in future investigations.     

Synthesis of (+/-)-3H-epivincamine via a Rh(II)-triggered cyclization/cycloaddition cascade

A synthesis of (+/-)-3H-epivincamine is reported. Important steps include (1) a Rh(II)-catalyzed intramolecular [3+2]-cycloaddition of an alpha-diazo indolo amide, (2) a reductive ring opening of the cycloadduct, (3) a decarboethoxylation reaction, and (4) a base-induced keto-amide ring contraction.