Mixed ab initio QM/MM modeling using frozen orbitals and tests with alanine dipeptide and tetrapeptide

Methodology is discussed for mixed ab initio quantum mechanics/molecular mechanics modeling of systems where the quantum mechanics (QM) and molecular mechanics (MM) regions are within the same molecule. The ab initio QM calculations are at the restricted Hartree–Fock level using the pseudospectral method of the Jaguar program while the MM part is treated with the OPLS force fields implemented in the IMPACT program. The interface between the QM and MM regions, in particular, is elaborated upon, as it is dealt with by “breaking” bonds at the boundaries and using Boys-localized orbitals found from model molecules in place of the bonds. These orbitals are kept frozen during QM calculations. Results from tests of the method to find relative conformational energies and geometries of alanine dipeptides and alanine tetrapeptides are presented along with comparisons to pure QM and pure MM calculations. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 1468–1494, 1999     

Photocontrolled Release of Chemicals from Nano‐ and Microparticle Containers

A benzoin‐derived diol linker was synthesized and used to generate biocompatible polyesters that can be fully decomposed on demand upon UV irradiation. Extensive structural optimization of the linker unit was performed to enable the defined encapsulation of diverse organic compounds in the polymeric structures and allow for a well‐controllable polymer cleavage process. Selective tracking of the release kinetics of encapsulated model compounds from the polymeric nano‐ and microparticle containers was performed by confocal laser scanning microscopy in a proof‐of‐principle study. The physicochemical properties of the incorporated and released model compounds ranged from fully hydrophilic to fully hydrophobic. The demonstrated biocompatibility of the utilized polyesters and degradation products enables their use in advanced applications, for example, for the smart packaging of UV‐sensitive pharmaceuticals, nutritional components, or even in the area of spatially selective self‐healing processes.     

An Argon–Oxygen Covalent Bond in the ArOH+ Molecular Ion

The OH⁺ cation is a well‐known diatomic for which the triplet (³Σ^?) ground state is 50.5 kcal mol^?1 more stable than its corresponding singlet (¹Δ) excited state. However, the singlet forms a strong donor–acceptor bond to argon with a bond energy of 66.4 kcal mol^?1 at the CCSDT(Q)/CBS level, making the singlet ArOH⁺ cation 3.9 kcal mol^?1 more stable than the lowest energy triplet complex. Both singlet and triplet isomers of this molecular ion were prepared in a cold molecular beam using different ion sources. Infrared photodissociation spectroscopy in combination with messenger atom tagging shows that the two spin isomers exhibit completely different spectral signatures. The ground state of ArOH⁺ is the predicted singlet with a covalent Ar?O bond.     

ROS‐Responsive N‐Alkylaminoferrocenes for Cancer‐Cell‐Specific Targeting of Mitochondria

Mitochondrial membrane potential is more negative in cancer cells than in normal cells, allowing cancer targeting by delocalized lipophilic cations (DLCs). However, as the difference is rather small, these drugs affect also normal cells. Now a concept of pro‐DLCs is proposed based on an N‐alkylaminoferrocene structure. These prodrugs are activated by the reaction with reactive oxygen species (ROS) forming ferrocenium‐based DLCs. Since ROS are overproduced in cancer, the high‐efficiency cancer‐cell‐specific targeting of mitochondria could be achieved as demonstrated by fluorescence microscopy in combination with two fluorogenic pro‐DLCs in vitro and in vivo. We prepared a conjugate of another pro‐DLC with a clinically approved drug carboplatin and confirmed that its accumulation in mitochondria was higher than that of the free drug. This was reflected in the substantially higher anticancer effect of the conjugate.     

Tetrasulphur Tetranitride: Phase Transition and Crystal Structure at Elevated Temperature

Rietveld X‐ray crystal structure investigations on S₄N₄ give evidence for a new orthorhombic high‐temperature phase (Pbcn, a = 883.9(1) pm, b = 875.5(1) pm, c = 725.81(9) pm) very close to the explosion temperature of the solid‐state material. The phase transition can be described using Landau's theory, yielding a critical temperature of 397 K and a critical exponent of 0.50.     

A compact olfactometer for IMS measurements and testing human perception

Production of easily controllable and measurable odor stimuli is needed when studying human olfaction, olfaction-related physiology and psychological reactions to odors. Controlled odor producing instruments are called olfactometers. For testing and calibrating new olfactometers or sensor arrays, a reliable input signal has to be produced to verify their accurate functionality. A common input signal in various olfactometers has been the use of volatile organic compounds (VOCs) in gaseous form. We present a compact olfactometer able to produce controlled continuous odor stimuli from three individual channels. For measuring the output gas flow, we used a ChemPro 100i (Environics, Finland) device that is based on aspiration ion mobility spectrometry (aIMS). IMS is a robust and sensitive method for measuring VOCs and is used especially in detecting toxic industrial chemicals and chemical warfare agents, but the technology is also suitable for other olfactory-related applications. The olfactometer was used to produce synthetic jasmine scent using three main odor components from jasmine oil and all the components were diluted using propylene glycol. The dilutions were supplied to the system using programmable syringe pumps, which guided the dilutions to individual evaporation units. We conducted experiments to verify the functionality of our olfactometer. Analysis of the ChemPro100i data showed that olfactometer can use different odor components to produce continuous, stable output flows with controlled concentrations.     

Transport of salts and micron-sized particles entrained from a boiling water pool

The entrainment of soluble (KI, CsI) and non-soluble (Al₂O₃) substances through droplets, which are produced by disintegrating steam bubbles at the surface of a boiling water pool, is determined in a pilot-scale facility. Integral measurements are conducted at steady-state conditions in an atmosphere of either pure steam or an air–steam mixture. The ratio of the entrained liquid mass flow and the gas mass flow through the pool, the entrainment factor, is determined for air–steam ratios between 0 and 0.47 kg/kg in the gas atmosphere and at constant total pressures between 2 and 6 bar. The influence of the vertical temperature profile in the gas atmosphere on the convective velocity field is demonstrated by phase Doppler anemometry and particle image velocimetry measurements at a location 2.1 m above the pool surface. The influences of nucleation and natural convection are demonstrated during slow de-pressurization of the facility at rates below 420 Pa/s.