Combining ferrocene,thiophene and a boronic acid: a hybrid ligand for reagentless electrochemical sensing of cis-diols

A redox-active affinity ligand suitable for reagentless sensing of cis-diols was synthesised and characterised. 4-[(Ferrocenylamino)methyl]thiophene-3-boronic acid (FcTBA) was allowed to interact with the model cis-diol, sorbitol. A discrete, cathodic shift of the redox potential was observed upon interaction of FcTBA with sorbitol thus providing simultaneous differentiation between the free and bound forms of this sensor molecule. Similar behaviour was observed also for FcTBA co-immobilised with thiophene in a mixed self-assembled monolayer on a gold electrode.     

Simple power supply for power load controlled isoelectric focusing

The power supply for IEF based on features of the Cockcroft‐Walton voltage multiplier (CW VM) is described in this work. The article describes a design of the IEF power supply, its electric characteristics, and testing by IEF analysis. A circuit diagram of the power supply included two opposite charged branches (each consisting of four voltage doublers). The designed CW VM was powered by 230 V/50 Hz alternate current and it generated up to 5 kV and 90 mW at the output. Voltage and current characteristics of the power supply were measured by known load resistances in the range from 10 kΩ to 1 GΩ, which is a common resistance range for IEF strip geometry. Further, the power supply was tested by a separation of a model mixture of colored pI markers using a 175 × 3 × 0.5 mm focusing bed. Automatically limited power load enabled analysis of samples without previous optimization of the focusing voltage or electric current time courses according to sample composition. Moreover, the developed power supply did not produce any intrinsic heat and was easy to set up with cheap and commonly available parts.     

2-Substituted thiazole-4-carboxamide derivatives as tiazofurin mimics: synthesis and in vitro antitumour activity

Tiazofurin analogues bearing a 5-hydroxymethyl-2-methyl-tetrahydrofuro[2,3-d][1,3]dioxol-6-ol moiety as a sugar mimic (2 and 3), and two novel thiazole-based acyclo-C-nucleosides 4 and 16 have been synthesized in multistep sequences starting from d-xylose (compounds 2 and 3) or from d-arabinose (compounds 4 and 16). All synthesized analogues showed potent in vitro antitumour activities against a panel of human tumour cell lines. Flow cytometry data suggest that cytotoxic effects of analogues 2–4 and 16 in the culture of K562 cells might be mediated by apoptosis. It was also found that these analogues induced changes in cell cycle distribution of K562 cells. Results of western blot analysis (upregulation of Bax and downregulation of Bcl-2, activation of caspase-3 and the presence of a PARP cleavage product) suggest that tiazofurin mimics (2–4 and 16) in K562 cells induced apoptosis in a caspase-dependent way.     

1′-Acetylferrocene amino acid esters and amides. A simple model for parallel β-helical peptides

In this study we present a synthesis and conformational analysis of 1′-acetylferrocene amino acid derivatives of type Ac–Fn–CO–AA–Y (Fn=ferrocene-1,1-diyl; AA=Gly, Ala or Val; Y=OMe or NHMe) as a simple model for parallel β-helical peptides. Derivatives with only one amino acid adopt a reduced number of total conformations and allow a more exact analysis of intramolecular hydrogen bonds (IHB) close to the ferrocene unit. Conformational analysis of these bioconjugates was performed by a combination of spectroscopic techniques (IR, NMR and CD) and corroborated by solution-phase DFT calculations. The investigation of ester conjugates 1–3 indicates the coexistence of non-bonded (an open forms) and hydrogen bonded NH_a group forming a 7-membered ring (γ-turn). The amide derivatives 4–6 with an additional NH_b hydrogen bond donor are mostly constituted of conformers with a 10-membered ring (β-turn) as a single IHB pattern or the β-turn accompanied by a 7-membered ring (γ-turn) containing NH_a group. The exchange of the amino acid side-chain does not significantly affect the conformational properties and IHB pattern of the studied conjugates 1–6.     

Recognition of chiral anions using calix[4]arene-based ureido receptor in the 1,3-alternate conformation

A new type of calixarene-based receptor designed for the recognition of chiral anions was prepared by the introduction of (S)-2-methylbutan-1-ol moieties into the lower rim of calixarene. The immobilization of calixarene skeleton in the 1,3-alternate conformation enabled the construction of a cavity consisting of preorganised ureido functions and chiral substituents in close proximity. This cavity is capable of chiral discrimination of selected anions as demonstrated on d- and l-phenylalaninates.     

Rapid determination of RMSDs corresponding to macromolecular rigid body motions

Finding the root mean sum of squared deviations (RMSDs) between two coordinate vectors that correspond to the rigid body motion of a macromolecule is an important problem in structural bioinformatics, computational chemistry, and molecular modeling. Standard algorithms compute the RMSD with time proportional to the number of atoms in the molecule. Here, we present RigidRMSD, a new algorithm that determines a set of RMSDs corresponding to a set of rigid body motions of a macromolecule in constant time with respect to the number of atoms in the molecule. Our algorithm is particularly useful for rigid body modeling applications, such as rigid body docking, and also for high‐throughput analysis of rigid body modeling and simulation results. We also introduce a constant‐time rotation RMSD as a similarity measure for rigid molecules. A C++ implementation of our algorithm is available at http://nano‐d.inrialpes.fr/software/RigidRMSD . © 2014 Wiley Periodicals, Inc.     

Surface and Structural Properties of Gold Nanoparticles and Their Biofunctionalized Derivatives in Aqueous Electrolytes Solution

Gold nanoparticles reduced by sodium citrate (d ～ 10 nm) and purchased gold colloid particles (d ～ 500 nm) were examined and compared. The properties of both gold particles and their biofunctionalized derivatives with L-cysteine and L-glutathione were studied in the presence of sodium nitrate. The structural investigations indicated an aggregated inner structure.

The isoelectric points of pure gold, citrate reduced gold, and functionalized gold were measured and compared. The low isoelectric point of pure gold/water interface was explained by considering the distribution and accumulation of H⁺ and OH^? ions within the interfacial water layer, being more pronounced for OH^? ions.      

A new reflector structure for facility thermalizing D–T neutrons

A facility for thermalization of fast neutrons (14.2 MeV) emitted by compact deuterium–tritium (D–T) neutron generators (NGs) for thermal neutron activation analysis is proposed. Its final design is based on Monte Carlo calculations (MCNP5). To maximize the ratio between the thermal neutron flux and the total neutron flux and simultaneously to ensure the highest possible value of the thermal neutron flux at the output surface, the facility should consist of a two-layer reflector [tungsten (W)—the inner part, molybdenum—the outer part], a two-layer multiplier (W followed by lead), a moderator (polyethylene followed by magnesium fluoride) and a collimator (molybdenum and nickel near the output surface). For the D–T NG producing the maximum available neutron yield 10¹⁵ n s^?1, the facility provides the thermal neutron flux 2.0 × 10¹¹ n cm^?2 s ^?1 and a slightly higher fast neutron flux 2.3 × 10¹¹ n cm^?2 s^?1. To improve the ratio of the thermal neutron flux to the fast neutron flux (above 2.7) an addition of a silicon layer to the moderator and especially a proper adjustment and a threefold increase of the multiplier thickness is necessary.     

Radionuclide X-ray fluorescence analysis of selected elements in drug samples with 8-hydroxyquinoline preconcentration

The preconcentration performance characteristics of precipitation of Mn, Fe, Co, Cu, Zn, Pb, Ni and Hg with 8-hydroxyquinoline (8HQ) and subsequent filtration through cellulose nitrate membrane were investigated for the X-ray fluorescence spectrometry identification and determination of trace metal ions in drug samples. Several parameters of the method were optimised, including pH and amount of 8HQ. The investigated ions were collected on cellulose nitrate membrane filter (Pragopor 4) as their complexes after the reaction with 8HQ. To conclude, optimal reaction conditions were found out (pH 10.5 for Fe, Co and pH 11.5 for Mn, Cu Zn, Pb and Hg, volume of 20 μl of the 2 % solution of hydroxyquinoline). Thereafter, the content of these elements was determined in the active substances of the infusion and injection solutions, i.e. NaCl, glucose and dextrane, and the results were compared with those ones obtained after the preconcentration with thioacetamid. The rapidity of this method, its multi-element character and low detection limits proved this method to be a very promising in rapid screening in quality control of drugs.