Modeling chemoadaptive behavior: X-ray structure of the trimethylamine oxide-urea (1∶4) complex

The structure of a trimethylamine oxide (TMAO)-urea 14 complex was investigated by x-ray crystallographic methods. C₃H₉NO, 4CH₄N₂O, M_r=315.33, monoclinic P2₁/n, a=11.004(2), b=9.8259, c=15.419(2),=106.88(4), V=1595.4(2) å₃, Z=4, D_x=1.313(1) g cm^–3, monochromatized Cu (=1.5418 å),=8.94 cm^–1, F(OOO)=680, temperature = 110K, final R=0.067, for 1786 unique observed reflections. Based on these studies and comparison with related compounds a model of the interaction of urea and TMAO with proteins, especially enzymes, is proposed. This is important in the physiology of many organisms, especially elasmobranchs. The counteracting effect of TMAO on urea perturbation of protein structure and function is interpreted in terms of water structure as a balance between the structure breaking effect of urea and the structure-stabilizing effect of TMAO.     

Macromonomer synthesis using α‐(2‐methyl‐2‐phenylpropyl)acrylates as addition–fragmentation chain‐transfer agents expelling the cumyl radical

α‐(2‐Methyl‐2‐phenylpropyl)acrylate (RS‐2) was examined as a C? C bond‐cleavage type addition–fragmentation chain transfer (AFCT) agent in the benzene solution polymerizations of styrene (St), ethyl methacrylate (EMA), and cyclohexyl acrylate (CHA) with the objective of achieving efficient macromonomer synthesis by radical polymerization. The AFCT efficiency was evaluated in terms of the decrease in the number‐average molecular weight (M_n) upon the addition of the AFCT agent and the number of unsaturated end groups introduced per chain (f). The AFCT efficiency was rationalized by the consideration of the relative importance of AFCT as an end‐forming event and the competition between ‐fragmentation and crosspropagation as adduct radical reaction pathways. In St and EMA polymerizations at 60 °C, RS‐2 resulted in higher f values and lower M_n values than methyl α‐(2‐methyl‐2‐carbomethoxypropyl)acrylate (MMA‐2), and this suggested the facilitation of ‐fragmentation due to the expulsion of the more stable cumyl radical from the RS‐2 adduct radical. Higher f values were observed for MMA‐2 than for RS‐2 in CHA polymerization because of unsaturated end group formation by ‐fragmentation of midchain radicals. However, RS‐2 resulted in lower M_n values for poly(CHA) than MMA‐2 because of a smaller contribution of crosspropagation. Retardation in the presence of the AFCT agents was affected by the balance between b‐fragmentation and crosspropagation and by the addition rate of the propagating radical to the AFCT agent. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 6021–6030, 2004     

Agreement between experiment and hybrid DFT calculations for O--H bond dissociation enthalpies in manganese complexes

Information on the accuracy of DFT functionals for redox reactions in transition metal systems is rather limited. To analyze the performance of some popular functionals for redox reactions in manganese systems, calculated O--H bond dissociation enthalpies for Mn-ligands in six different complexes are compared to experimental results. In this benchmark, B3LYP performs well with a mean absolute error of 3.0 kcal/mol. B98 gives similar results to B3LYP (error of 3.8 kcal/mol). B3LYP* gives lower O--H bond strengths than B3LYP and has a mean error of 5.0 kcal/mol. Compared to B98 and B3LYP, B3LYP* has an error trend for the manganese ligands that is more similar to the error for a free water molecule. The nonhybrid functional BLYP consistently and significantly underestimates the O--H bond strengths by approximately 20 kcal/mol. HCTH407 has a rather large mean error of 9.4 kcal/mol and shows no consistent trend. The results support the use of hybrid functionals and the present computational method for large model systems containing manganese. An example is the oxygen evolving complex in photosystem II where hybrid functionals predict the appearance of a Mn(IV)-oxyl radical before the O--O bond formation step.     

Appearance of pure fluorocarbon micelles surveyed by fluorescence quenching of amphiphilic quinoline derivatives in fluorocarbon and hydrocarbon surfactant mixtures

A halide-sensitive fluorescence probe was utilized to evaluate the miscibility of fluorocarbon and hydrocarbon surfactants in aqueous micellar systems. The fluorescence of 6-methoxy-N-1,1,2,2-tetrahydroheptadecafluorodecylquinolinium chloride, FC10MQ, was quenched by halide ions dissociated from the surfactant. The fluorescence in micellar solutions showed an initially rapid decay. This suggests that halide ions effectively quench FC10MQ fluorescence at the micellar surface. The subsequent slow decay corresponds to the quenching of FC10MQ fluorescence in the aqueous bulk phase by the free counterions. The Stern-Volmer plots for fluorescence quenching gave a distinct break at the critical micelle concentration of the cationic surfactants. The abrupt increase in fluorescence quenching is attributed to the solubilization of the probe in the micelles. The fluorescence quenching behavior provides direct information about the immiscibility of fluorocarbon and hydrocarbon species in micelles, and the results indicate that almost pure fluorocarbon micelles appear in surfactants mixtures.     

Synthesis of Enantiomerically Pure Ferrocenes from Glycofuranosyl-cyclopentadienes,synthetic equivalents of (alkoxyalkyl)fulvenes

Cyclopentadienyl C-glycosides (= glycosyl-cyclopentadienes) have been prepared as latent fulvenes. Their reaction with nucleophiles leads to cyclopentadienes substituted with (protected) alditol moieties and, hence, to enantiomerically pure metallocenes. Treatment of 1 with cyclopentadienyl anion gave the epimeric glycosyl-cyclopentadienes 6 / 7 (Scheme 1). Each epimer consisted of a ca. 1:1 mixture of the 1, 3-and 1, 4-cyclopentadienes a and b , respectively, which were separated by prep. HPLC. Slow regioisomerisation occurred at room temperature. Diels-Alder addition of N-phenylmaleimide to 6a / b ca. 3:7 at room temperature yielded three ‘endo’-adducts, i.e., a disubstituted alkene ( 8 or 9 , 25%) and the trisubstituted alkenes 10 (45%) and 11 (13%). The structure of 10 was established by X-ray analysis. Reduction of 6 / 7 (after isolation or in situ) with LiAlH₄ gave the cyclopentadienylmannitols 12a / b (80%) which were converted to the silyl ethers 13a / b (Scheme 2). Lithiation of 13a / b and reaction with FeCl₂ or TiCl₄ led to the symmetric ferrocene 14 (76%) and the titanocene 15 (34%), respectively. The mixed ferrocene 16 (63%) was prepared from 13a / b and pentamethylcyclopentadiene. Treatment of 6 / 7 with PhLi at ?78° gave a 5:3 mixture of the 1-C-phenylated alcohols 17a / b and 18a / b (71%) which were silylated to 19a / b and 20a / b , respectively. Lithiation of 19 / 20 and reaction with FeCl₂ afforded the symmetric ferrocenes 21 and 22 and the mixed ferrocene 23 (54:15:31, 79%) which were partially separated by MPLC. The configuration at C(1) of 17–22 was assigned on the basis of a conformational analysis. The reaction of the ribofuranose 24 with cyclopentadienylsodium led to the epimeric C-glycosides 27a / b and 28a (57%, ca. 1:1, Scheme 3). The in-situ reduction of 27 / 28 with LiAlH₄ followed by isopropylidenation gave 25a / b (65%) which were transformed into the ferrocene 26 (79%) using the standard method. Phenylation of 27 / 28 , desilylation, and isopropylidenation gave a 20:1 mixture of 33a / b and 34a / b (86%) which was separated by prep. HPLC. The same mixture was obtained upon phenylation of the fulvene 32 which was obtained in 36% yield from the reaction of the aldehydo-ribose 30 with cyclopentadienylsodium at ?100°. Lithiation of 33 / 34 and reaction with FeCl₂ gave the symmetric ferrocene 35 (88%). Similarly, the aldehydo-arabinose 36 was transformed via the fulvene 37 (32%) into a 18:1 mixture of 38a / b and 39a / b (78%) and, hence, into the ferrocene 40 (83%). Conformational analysis allowed to assign the configuration of 33–35 , whereas an X-ray analysis of 40 established the (1S)-configuration of 38a / b and 40 . The opposite configuration at C(1) of 38a / b and 33a / b was established by chemical degradation (Scheme 4). Hydrogenation (→ 41 and 44 , resp.), deprotection (→ 42 and 45 , resp.), NaIO₄ oxidation, and NaBH₄ reduction yielded (+)-(S)- 43 and (?)-(R)- 43 , respectively.     

Enthalpies of Lyotropic Liquid Crystalline Phases. : 2. The Partial Molar Enthalpies of the Lamellar and Hexagonal Phases in the System N-Pentanol-Sodium N-Octanoate-Water

The relative partial molar enthalpies of the components in the system N-pentanol-sodium N-octanoate-water (C₅OH-NaC₈-H₂O) have been determined in the lamellar (D-) and hexagonal (E-) liquid crystalline phases formed in this system at 25°C. The enthalpies are correlated with Bragg spacings and earlier nmr studies. They indicate that (a) the minimum amount of water needed to hydrate the polar groups limits the region of existence of both D- and E-phase towards low water contents, (b) the interaction between -OH and -COO is especially important in stabilizing the D-phase containing large amounts of water, (c) the Bragg spacings and the enthalpies both change their concentration dependence markedly when the maximum amount of water that can be bound by primary hydration of the polar groups and the counter ions in the D-phase is exceeded, (d) enthalpies of transition from one phase to another are small compared to enthalpy changes with composition within the phases; the same holds for Bragg spacings. Hence, the composition of the sample (above all, the mole fraction of NaC₈) is more important than the phase structure in determining these properties. It is obvious that further studies of enthalpies in similar systems can give important information on the factors governing phase stabilities and structural changes within the phases.     

Asymmetric conjugate addition of thioglycolate to a range of chalcones using tetrahydroisoquinoline (TIQ) N,N′-dioxide ligands

A series of novel TIQ based N,N′-oxide ligands were synthesised and screened for their catalytic activity in the enantioselective conjugate addition of thioglycolate to chalcones. Bulky groups on the side chain of the TIQ backbone provided the highest enantioselectivity of up to 88% with 10 mol % catalyst loading. It was also observed that these reactions proceeded optimally in the presence of dichloromethane as a solvent. Screening of various metals emphasized La(OTf)₃ as the ideal pre-catalyst for this particular reaction.