NMR studies of interactions between periplasmic chaperones from uropathogenic E. coli and pilicides that interfere with chaperone function and pilus assembly

Adherence of uropathogenic Escherichia coli to host tissue is mediated by pili, which are hair-like protein structures extending from the outer cell membrane of the bacterium. The chaperones FimC and PapD are key components in pilus assembly since they catalyse folding of subunits that are incorporated in type 1 and P pili, respectively, and also transport the subunits across the periplasmic space. Recently, compounds that inhibit pilus biogenesis and interfere with chaperone-subunit interactions have been discovered and termed pilicides. In this paper NMR spectroscopy was used to study the interaction of different pilicides with PapD and FimC in order to gain structural knowledge that would explain the effect that some pilicides have on pilus assembly. First relaxation-edited NMR experiments revealed that the pilicides bound to the PapD chaperone with mM affinity. Then the pilicide-chaperone interaction surface was investigated through chemical shift mapping using 15N-labelled FimC. Principal component analysis performed on the chemical shift perturbation data revealed the presence of three binding sites on the surface of FimC, which interacted with three different classes of pilicides. Analysis of structure-activity relationships suggested that pilicides reduce pilus assembly in E. coli either by binding in the cleft of the chaperone, or by influencing the orientation of the flexible F1-G1 loop, both of which are part of the surface by which the chaperone forms complexes with pilus subunits. It is suggested that binding to either of these sites interferes with folding of the pilus subunits, which occurs during formation of the chaperone-subunit complexes. In addition, pilicides that influence the F1-G1 loop also appear to reduce pilus formation by their ability to dissociate chaperone-subunit complexes.     

6-Methyl-2-pyridinecarboxamide oxime, a reagent for copper

6-Methyl-2-pyridinecarboxamide oxime (R) forms a yellow compound with copper(I), the molar absorptivity being 7.2 x 10(3) at the wavelength of maximum absorption, 405 nm. The copper compound, CuR(2), forms completely over the pH range 4.5-7 and is easily extracted into isoamyl alcohol. R is highly specific for copper, the methyl group neighbouring the ring nitrogen atom preventing reaction with iron and other metals.     

Model aluminum-poly(p-phenylenevinylene) interfaces studied by surface raman spectroscopy

Polymeric organic light-emitting diodes (OLEDs) have emerged as inexpensive and versatile alternatives to traditional inorganic-based display technologies. Further advances in this field depend on extending device lifetimes and improving electroluminescence efficiencies, both of which are strongly coupled to the integrity of the electrode/organic contacts. Therefore, the deposition of low-work function metals on organic materials has been extensively studied by X-ray photoelectron spectroscopy (XPS), ultraviolet photoemission spectroscopy (UPS), and near-edge X-ray adsorption fine structure (NEXAFS) to ascertain information about the chemical and electronic states within the interfacial region. However, to date, the only molecular structural information about metal-organic species formed in these regions has come from fits of theoretical models to existing XPS and UPS data. Very little direct structural information exists about the potential multitude of metal-organic species formed during cathode deposition. We report the use of surface Raman spectroscopy to study the interactions between aluminum and trans-stilbene, a model for poly(p-phenylenevinylene) (PPV). The Raman spectral data suggest preferential formation of covalent Al-C bonds at the vinylene carbons as opposed to the phenyl carbons of PPV.     

Cycloaddition of delta2-thiazolines and acyl ketenes under acidic conditions results in bicyclic 1,3-oxazinones and not 6-acylpenams as earlier reported

[reaction: see text] Optically active Delta(2)-thiazolines 4 were previously reported to react with acyl Meldrum's acid derivatives 5 under acidic conditions (HCl (g) in benzene) to stereoselectively give 6-acylpenams 1. Recently we have discovered that the structure elucidation of these compounds was incorrect. Thus, we report new data showing that instead of acyl beta-lactams, the optically active isomers 3R,9R-1,3-oxazinones 3a-g are obtained stereoselectively in 38-93% yields.     

Effect of Pressurized Solvent Environments on the Alkyl Chain Order of Octadecylsilane Stationary Phases by Raman Spectroscopy

The effect of pressure on solute retention in HPLC has been controversial, since direct evidence for structural changes in the stationary phase due to pressure is not readily available. In this report, the effect of pressurization in four solvent environments on the conformational order of one monomeric and one polymeric octadecylsilane stationary phase is investigated using Raman spectroscopy. Normalized changes in a Raman spectral indicator of conformational order after exposure to these pressurized solvent environments are compared to those observed by exposure to the same solvent at atmospheric pressure. Although solvation has a greater impact on conformational order than pressurization, measurable changes induced by pressure are observed for both stationary phases. Small effects (<2–3% change in order) due to pressure are noted for the monomeric stationary phase in all solvents; the magnitudes of these effects generally correlate with isothermal compressibility of the solvent. Slightly larger pressure effects are observed for the polymeric stationary phase (4–7% change in order), with pressurization in polar solvents inducing greater changes in order than in nonpolar solvents. Collectively, these results are interpreted in terms of differences in the local surface bonding density and interchain spacing of the alkylsilanes of these two stationary phases.

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Underpotential deposition of thallium, lead, and cadmium at silver electrodes modified with self-assembled monolayers of (3-mercaptopropyl)trimethoxysilane

Investigation of the underpotential deposition (UPD) of three metals-Tl, Pb, and Cd-on Ag surfaces modified with self-assembled monolayers (SAMs) of (3-mercaptopropyl)trimethoxysilane (3MPT) is reported. On the basis of the observation of negative potential shifts for their UPD processes, Tl and Pb undergo UPD directly on the underlying Ag surface by insertion between the Ag-S bond. This process is proposed to occur by penetration of the 3MPT monolayer by hydrated metal ions through spaces in six-membered siloxane rings that form at the terminus of the 3MPT layer after hydrolysis and condensation. In contrast, Cd does not undergo similarly facile UPD at 3MPT-modified Ag electrodes due to a hydrated ion size too large to fit through these openings. The voltammetric evidence that suggests that the hydrated metal cation size, as described by the Stokes diameter, is the primary determinant of Ag electrode accessibility for UPD through the cross-linked 3MPT layer is further supported by molecular mechanics energy minimization computations of six-membered siloxane rings on each of the three low-index faces of Ag. Finally, the 3MPT monolayer is shown to be exceptionally stable to repeated UPD/stripping cycles of Tl and Pb in contrast to SAMs of similar thickness formed from normal alkanethiols.     

Interfacial structure in thin water layers formed by forced dewetting on self-assembled monolayers of omega-terminated alkanethiols on Ag

A method for the spectroscopic characterization of interfacial fluid molecular structure near solid substrates is reported. The thickness and interfacial molecular structure of residual ultrathin D20 films remaining after forced dewetting on alkanethiolate self-assembled monolayers (SAMs) of 11 1-mercaptoundecanoic acid (11-MUA), 11-mercaptoundecanol (11-MUD), and undecanethiol (UDT) on Ag are investigated using ellipsometry and surface Raman spectroscopy. The residual film thickness left after withdrawal is greater on hydrophilic SAMs than on hydrophobic SAMs. This behavior is rationalized on the basis of differing degrees of fluid slip within the interfacial region due to different interfacial molecular structure. The v(O-D) regions of surface Raman spectra clearly indicate unique interfacial molecular properties within these films that differ from bulk D20. Although the residual films are created by shear forces and Marangoni flow at the three-phase line during the forced dewetting process, the nature of the films sampled optically must also be considered from the standpoint of thin film stability after dewetting. Thus, the resulting D20 films exist in vastly different morphologies depending on the nature of the water-SAM interactions. Residual D20 is proposed to exist as small nanodroplets on UDT surfaces due tospontaneous rupture of the film after dewetting. In contrast, on 11-MUD and 11-MUA surfaces, these films exist in a metastable state that retains their conformal nature on the underlying modified surface. Analysis of the peak intensity ratios of the so-called "ice-like" to "liquid-like" v(O-D) modes suggests more ice-like D20 character near 11-MUD surfaces, but more liquid-like character near 11-MUA and UDT surfaces. The creation of residual ultrathin films by forced dewetting is thus demonstrated to be a powerful method for characterizing interfacial molecular structure of fluids near a solid substrate under ambient conditions of temperature and pressure.     

High spin spectroscopy of 139Pr

The high spin states in N=80 ¹³⁹Pr have been investigated by in-beam γ-spectroscopic techniques following the reaction ¹³⁰Te (¹⁴N, 5n) reaction at E=75 MeV, using a gamma detector array, consisting of seven 23% compton-suppressed high purity germanium detectors and a multiplicity ball of fourteen bismuth germanate elements. Based on γ-γ coincidence data, the level scheme of ¹³⁹Pr has been considerably extended up to 7.2 MeV excitation. Tentative spin-parity assignments are done for the newly proposed levels on the basis of the DCO ratios corresponding to strong gates and the available information from the earlier light ion experiments.