In silico chemical library screening and experimental validation of a novel 9-aminoacridine based lead-inhibitor of human S-adenosylmethionine decarboxylase

In silico chemical library screening (virtual screening) was used to identify a novel lead compound capable of inhibiting S-adenosylmethionine decarboxylase (AdoMetDC). AdoMetDC is intimately involved in the biosynthesis of polyamines, which are essential for tumor progression and are elevated in numerous types of tumors. Therefore, inhibition of this enzyme provides an attractive target for the discovery of novel anticancer drugs. We performed virtual screening using a computer model derived from the X-ray crystal structure of human AdoMetDC and the National Cancer Institute's Diversity Set (1990 compounds). Our docking study suggested several compounds that could serve as drug candidates since their docking modes and scores revealed potential inhibitory activity toward AdoMetDC. Experimental testing of the top-scoring compounds indicated that one of these compounds (NSC 354961) possesses an IC50 in the low micromolar range. A search of the entire NCI compound collection for compounds similar to NSC 354961 yielded two additional compounds that exhibited activity in the experimental assay but with significantly diminished potency relative to NSC 354961. In this report, we disclose the activity of NSC 354961 against AdoMetDC and its probable binding mode based on computational modeling. We also discuss the importance of virtual screening in the context of enzymes that are not readily amenable to high-throughput assays, thereby demonstrating the efficacy of virtual screening, combined with selective experimental testing, in identifying new potential drug candidates.     

A Horizontal Magnetic Tweezers for Studying Single DNA Molecules and DNA-Binding Proteins

We report data from single molecule studies on the interaction between single DNA molecules and core histones using custom-designed horizontal magnetic tweezers. The DNA-core histone complexes were formed using λ-DNA tethers, core histones, and NAP1 and were exposed to forces ranging from ~2 pN to ~74 pN. During the assembly events, we observed the length of the DNA decrease in approximate integer multiples of ~50 nm, suggesting the binding of the histone octamers to the DNA tether. During the mechanically induced disassembly events, we observed disruption lengths in approximate integer multiples of ~50 nm, suggesting the unbinding of one or more octamers from the DNA tether. We also observed histone octamer unbinding events at forces as low as ~2 pN. Our horizontal magnetic tweezers yielded high-resolution, low-noise data on force-mediated DNA-core histone assembly and disassembly processes.     

Polarization measurements of the non-characteristic radiation emitted from collisions between high energy A1 ions

We have measured the angular distribution of the non-characteristic K X-ray radiation (NCR) in very fast A1-A1 collisions and find that it agrees well with the maximum value predicted by the induced mechanism of Müller et al.     

Determination of sulfur environments in borosilicate waste glasses using X-ray absorption near-edge spectroscopy

Sulfur can be the waste-loading limiting constituent for vitrification of sulfur-bearing radioactive wastes due to low solubility in silicate melts. Methods to improve sulfur loading would benefit from improved understanding of the structural aspects of sulfur incorporation in borosilicate and other glasses. To this end, sulfur XANES spectra were collected for eight crystalline standards and twenty-four glasses, including borosilicate, phosphate, and borate compositions. Spectra for the standards show a systematic energy shift of the sulfur K-edge from 2469 to 2482 eV, as sulfur valence increases from 2− (in sulfides) to 6+ (in sulfates). Most crucible glasses investigated have simple edges near 2482 eV that indicate sulfur in the form of sulfate only. Other glasses, some synthesized under reducing conditions, have complicated edges, indicating sulfate, sulfite, and more reduced species that may include S, S-S doublets, or short polysulfide chains. Sulfide species (S²⁻) were not dominant in any of the samples over the range of redox conditions investigated. These results indicate that sulfur incorporation is considerably more complex than would be suggested by the conventional interpretation of the redox-dependence of sulfur solubility, which considers only sulfate and sulfide species. Raman data indicate that several of the glasses investigated are not homogeneous with regard to all sulfur species.     

Production of soft X-ray emitting slow multiply charged ions: Recoil ion spectroscopy

A study of Ne L-shell vacancy production by S^～14+, Cl^～12+ ions has shown copious production of NeIINeVIII excited states with ～10^?18 cm² cross sections and recoil velocities which may permit significantly higher resolution spectroscopy than is possible with beam-foil methods.     

Threshold photodetachment in a repulsive potential

We report on the first experimental observation of a new threshold behavior observed in the 5(2)G partial channel in photodetachment of K(-). It arises from the repulsive polarization interaction between the detached electron and the residual K(5(2)G) atom, which has a large negative dipole polarizability. In order to account for the observation in the K(5(2)G) channel, we have developed a semiclassical model that predicts an exponential energy dependence for the cross section. The measurements were made with collinear laser-ion beams and a resonance ionization detection scheme.