Antimicrobial properties of biosynthesized silver nanoparticles studied by flow cytometry and related techniques

This work reports the effect of silver bionanoparticles (Bio(AgNPs) synthesized by Actinobacteria CGG 11n on selected Gram (+) and Gram (–) bacteria. Flow cytometry, classical antibiogram method and fluorescent microscopy approach was used for evaluation of antimicrobial activity of Bio(AgNPs) and their combination with antibiotics. Furthermore, the performed research specified the capacity of flow cytometry method as an alternative to the standard ones and as a complementary method to electromigration techniques. The study showed antibacterial activity of both BioAgNPs and the combination of antibiotics/BioAgNPs against all the tested bacteria strains in comparison with a diffusion, dilution and bioautographic methods. The synergistic effect of antibiotics/BioAgNPs combination (e.g. kanamycin, ampicillin, neomycin and streptomycin) was found to be more notable against Pseudomonas aeruginosa representing a prototype of multi‐drug resistant “superbugs” for which effective therapeutic options are very limited.     

Theoretical studies of Cu(I) sites in faujasite and their interaction with carbon monoxide

Sitting, coordination, and properties of Cu(I) cations in zeolite faujasite are investigated using a combined quantum mechanics-interatomic potential function method. The coordination of Cu(I) ions depends on their location within the zeolite lattice. Cu(I) located inside the hexagonal prisms (site I') and in the plane of six-membered aluminosilicate rings on the walls of sodalite units (site II) is threefold coordinated, whereas Cu(I) located in the supercages (site III) is twofold coordinated. In agreement with available experimental data Cu(I) appears to be more strongly bound in sites I' and II than in site III. The binding energy of site II Cu(I) ions increases with the number of Al atoms, but only closest Al atoms have a substantial influence. The CO molecule binds more strongly onto sites with weaker bound cations and lower coordination. We assign the two CO stretching IR bands observed for Cu(I)-Y zeolites to sites II with one Al (2157-2161 cm(-1)) and two Al atoms (2140-2148 cm(-1)) in the six-membered aluminosilicate ring. For Cu(I)-X we tentatively assign the high frequency band to site III (2156-2168 cm(-1)) and the low-frequency band to site II with three Al atoms in the six-membered ring (2136-2138 cm(-1)).     

The Effect of α-, β- and γ-Cyclodextrin on Wheat Dough and Bread Properties

Cyclodextrins (CDs) are cyclic oligosaccharides that have found widespread application in numerous fields. CDs have revealed a number of various health benefits, making them potentially useful food supplements and nutraceuticals. In this study, the impact of α-, β-, and γ-CD at different concentrations (up to 8% of the flour weight) on the wheat dough and bread properties were investigated. The impact on dough properties was assessed by alveograph analysis, and it was found that especially β-CD affected the viscoelastic properties. This behavior correlates well with a direct interaction of the CDs with the proteins of the gluten network. The impact on bread volume and bread staling was also assessed. The bread volume was in general not significantly affected by the addition of up to 4% CD, except for 4% α-CD, which slightly increased the bread volume. Larger concentrations of CDs lead to decreasing bread volumes. Bread staling was investigated by texture analysis and low field nuclear magnetic resonance spectroscopy (LF-NMR) measurements, and no effect of the addition of CDs on the staling was observed. Up to 4% CD can, therefore, be added to wheat bread with only minor effects on the dough and bread properties.     

l-Arginine Improves Solubility and ANTI SARS-CoV-2 Mpro Activity of Rutin but Not the Antiviral Activity in Cells

The COVID-19 pandemic outbreak prompts an urgent need for efficient therapeutics, and repurposing of known drugs has been extensively used in an attempt to get to anti-SARS-CoV-2 agents in the shortest possible time. The glycoside rutin shows manifold pharmacological activities and, despite its use being limited by its poor solubility in water, it is the active principle of many pharmaceutical preparations. We herein report our in silico and experimental investigations of rutin as a SARS-CoV-2 Mpro inhibitor and of its water solubility improvement obtained by mixing it with l-arginine. Tests of the rutin/l-arginine mixture in a cellular model of SARS-CoV-2 infection highlighted that the mixture still suffers from unfavorable pharmacokinetic properties, but nonetheless, the results of this study suggest that rutin might be a good starting point for hit optimization.     

RNA Ligation for Mono and Dually Labeled RNAs

Labeled RNAs are invaluable probes for investigation of RNA function and localization. However, mRNA labeling remains challenging. Here, we developed an improved method for 3′-end labeling of in vitro transcribed RNAs. We synthesized novel adenosine 3′,5′-bisphosphate analogues modified at the N6 or C2 position of adenosine with an azide-containing linker, fluorescent label, or biotin and assessed these constructs as substrates for RNA labeling directly by T4 ligase or via postenzymatic strain-promoted alkyne-azide cycloaddition (SPAAC). All analogues were substrates for T4 RNA ligase. Analogues containing bulky fluorescent labels or biotin showed better overall labeling yields than postenzymatic SPAAC. We successfully labeled uncapped RNAs, NAD-capped RNAs, and 5′-fluorescently labeled m⁷Gp₃A_m-capped mRNAs. The obtained highly homogenous dually labeled mRNA was translationally active and enabled fluorescence-based monitoring of decapping. This method will facilitate the use of various functionalized mRNA-based probes.     

Liquid scintillation counters calibration stability over long timescales

Liquid scintillation spectrometry is widely used for the analysis of alpha and beta emitting radionuclides. Robust calibration of liquid scintillation (LS) spectrometers is fundamental to accurate LS measurement but at the same time is time consuming and costly, particularly if a wide range of radionuclides are analysed by the laboratory. The frequency of the calibration varies in different laboratories and is based on many practical and operational factors. This work summarizes the observations regarding variations in 1220 Quantulus spectrometers efficiency calibrations performed annually using various radionuclides: ³H ⁶³Ni, ⁵⁵Fe, ³⁶Cl, ⁴⁵Ca, ¹⁴⁷Pm, ²⁴¹Pu, ⁹⁹Tc for a period of 9 years and discusses the implication to calibration frequency.

     

The Poincaré Map of Randomly Perturbed Periodic Motion

A system of autonomous differential equations with a stable limit cycle and perturbed by small white noise is analyzed in this work. In the vicinity of the limit cycle of the unperturbed deterministic system, we define, construct, and analyze the Poincaré map of the randomly perturbed periodic motion. We show that the time of the first exit from a small neighborhood of the fixed point of the map, which corresponds to the unperturbed periodic orbit, is well approximated by the geometric distribution. The parameter of the geometric distribution tends to zero together with the noise intensity. Therefore, our result can be interpreted as an estimate of the stability of periodic motion to random perturbations. In addition, we show that the geometric distribution of the first exit times translates into statistical properties of solutions of important differential equation models in applications. To this end, we demonstrate three distinct examples from mathematical neuroscience featuring complex oscillatory patterns characterized by the geometric distribution. We show that in each of these models the statistical properties of emerging oscillations are fully explained by the general properties of randomly perturbed periodic motions identified in this paper.     

A Characterization of Finitely Decidable Congruence Modular Varieties

For every finitely generated, congruence modular variety of finite type we find a finite family of finite rings such that the variety is finitely decidable if and only if is congruence permutable and residually small, all solvable congruences in finite algebras from are Abelian, each congruence above the centralizer of the monolith of a subdirectly irreducible algebra from is comparable with all congruences of , each homomorphic image of a subdirectly irreducible algebra with a non-Abelian monolith has a non-Abelian monolith, and, for each ring from , the variety of -modules is finitely decidable.

     

A discrete model for optimal operation of fossil-fuel generators of electricity

This paper presents a new discrete approach to the price-based dynamic economic dispatch (PBDED) problem of fossil-fuel generators of electricity. The objective is to find a sequence of generator temperatures that maximizes profit over a fixed-length time horizon. The generic optimization model presented in this paper can be applied to automatic operation of fossil-fuel generators or to prepare market bids, and it works with various price forecasts. The model’s practical applications are demonstrated by the results of simulation experiments involving 2009 NYISO electricity market data, branch-and-bound, and tabu-search optimization techniques.     

Graph Approach to the Computation of the Homology of Continuous Maps

We introduce an efficient algorithm to compute the homomorphism induced in (relative) homology by a continous map. The algorithm is based on a cubical approximation of the map and the theory of multivalued maps. A software implementation of the algorithms introduced in this paper is available at [27].