Virus Particles Monitored by Fluorescence Spectroscopy: A Potential Detection Assay for Macromolecular Assembly¶

Native fluorescence spectroscopy was used for in situ investigations of two lipid‐containing bacteriophages from the cystovirus family as well as their Pseudomonad host cells. Both the viruses φ6 and φ12 and their bacterial host proteins contain the amino acid tryptophan (trp), which is the predominant fluorophore in UV. Within proteins, trp's structural environment differs, and the differences are reflected in their spectroscopic signatures. It was observed that the peak of the trp emission from both viruses was at 330 nm, a significantly shorter wavelength than trp in either the Pseudomonad host cells or the amino acid's chemical form. This allowed us to monitor the viral attachment process and subsequent lytic release of progeny virus particles by measurement of the trp emission spectra during the infection process. This work demonstrates that fluorescence may offer a novel tool to detect viruses and monitor viral infection of cells and may be part of a biodefense application.     

Infrared spectroscopic properties of water molecules dissolved in some oxygen bases

The infrared spectra in the OH-stretching and HOH-bending regions of H₂O, and in the OH-stretching region of HDO dissolved in a number of ketones and ethers have been recorded. The number of component bands and their wavenumbers, halfwidths and intensities, as well as the total OH-stretching intensity in each solvent, have been interpreted in terms of a model for the types of hydrogen bonded solvent:water complexes formed in these systems.The effect of temperature on the spectra of H₂O in some of the ketones has been rationalized on the basis of the equilibrium existing between the different hydrogen bonded species present in solution.     

Monte Carlo simulations of the solution structure of simple alcohols in water-acetonitrile mixtures

Monte Carlo simulations have been performed to explore the solution structure of ethyl, isopropyl, isobutyl, and tertiary butyl alcohols in pure water, pure acetonitrile, and different mixtures of the two solvents. The explicit solvent studies in NpT ensembles at T = 298 K illustrate that the solute "discriminates" the solvent's components and that the composition of the first solvation shell differs from that of the bulk solution. Since the polarizable continuum dielectric method (PCM) does not presently model the solvation of molecules with both polar and apolar sites in mixed protic solvents, we suggest a direction for further program development wherein a continuum dielectric method would accept more than one solvent and the solute sites would be solvated by user-defined solvent components. The prevailing solvation model will be determined upon the lowest free energy calculated for a particular solvation pattern of the solute having a specific conformational/tautomeric state. Characterization of equilibrium hydrogen-bond formation becomes a complicated problem that depends on the chemical properties of the solute and its conformation, as well as upon the varying nature of the first solvation shell. For example, while the number of hydrogen bonds to secondary and tertiary alcohol solutes are nearly constant in pure water and in water-acetonitrile mixtures with at least 50% water content, the number of hydrogen bonds to primary alcohols gradually decreases for most of their conformations when acetonitrile content is increased. Nonetheless, the calculations indicate that O-H...O(water) hydrogen bonds are still possible in a small fraction of the arrangements for the solution models with water content of 30% or less. The isopentene solute does not form any observable hydrogen bonds, despite having an electron-rich, double-bond site.     

ESR STUDY OF ORIENTED TRIPLET MOLECULES GENERATED BY EXCITATION WITH POLARIZED LIGHT

Abstract— The lowest-lying triplet states of a variety of aromatic molecules and complexes have been generated by the irradiation of these compounds in solvent glasses with plane-polarized light. Measurements of the allowed (Δ M=± 1) ESR transitions clearly demonstrate that the triplets so formed are oriented with respect to the external magnetic field. By this method the triplet zero-field splitting parameters, D and E , can be evaluated simply and reliably. Intramolecular energy transfer is postulated to explain the triplet spectra of Zn( o -phen)₂(NO₃)₂ and Zn( o -phen)₃(NO₃)₂. It was observed that in triplet-triplet energy transfer from benzophenone to naphthalene there is no apparent orientation requirement between the donor and acceptor molecules. Further areas of significance and application of this technique are suggested.     

Phosphaalkynes—Syntheses,Reactions, Coordination Behavior [New Synthetic Methods (73)]

Organophosphorus compounds have been applied in two ways in chemical synthesis. They can either be used as a reagent in a step of the synthesis (for example, in the Wittig reaction) or they can be incorporated directly into the target molecule. This second application, in particular, has expanded greatly in the last few years with the preparation of low-coordination phosphorus compounds. These include the phosphaalkynes, which are of great interest to organic and inorganic chemists. Phosphaalkynes have been employed in the synthesis of heterocyclic compounds, phosphaarenes and their valence isomers, and polycyclic compounds. Further applications have been the use of phosphaalkynes as new ligand systems in complex chemistry and their cyclooligomerization with organometallic reagents. While the chemical properties of phosphaalkynes have little in common with those of nitriles, they are in many ways very similar to those of the isoelectronic acetylenes.     

Synthèse de flavones et de xanthones dans la série du benzo[4,5]thiophène

We describe the first synthesis of 2-arylbenzo[4,5]thieno-[2,3-b]pyran-4-one and of 2-arylbenzo [4,5] thieno [3,2-b] pyran-4-one, from benzo [4,5] thiophene and we have extended these cyclizations to obtain the heterocyclic analogs of the xanthones.     

Generalized quadrangles in finite projective spaces

If a pointset of the projective spacePG(d,q), together with a lineset ofPG(d,q) form a generalized quadrangleS, thenS is of classical type. This beautiful theorem was proved by F. Buekenhout and C. Lefèvre. In this paper we give a simple proof of this theorem in the cased 4 (we suppose that the result is established ford = 3). We remark that in our proof a central role is played by the theory of subquadrangles.     

The cluster expansion for potentials with exponential fall-off

Continuing the work of a previous paper, the Glimm-Jaffe-Spencer cluster expansion from constructive quantum field theory is adapted to treat quantum statistical mechanical systems of particles interacting by potentials that fall off exponentially at large distance. The HamiltonianH ₀+V need be stable in the extended sense thatH ₀+4V+BN0 for someB. In this situation, with a mild technical condition on the potentials, the cluster expansion converges and the infinite volume limit of the correlation functions exists, at low enough density. These infinite volume correlation functions cluster exponentially. A natural system included in the present treatment is that of matter with ther ^–1 potential replaced bye ^–ar/r. The Hamiltonian is stable, but the system would collapse in the absence of the exclusion principle—the potential is unstable. Therefore this system cannot be handled by the classic work of Ginibre, which requires stable potentials.This work was supported in part by NSF Grant MPS 75-10751Michigan Junior Fellow     

Estimating measurement uncertainty in an afternoon. A case study in the practical application of measurement uncertainty

The ISO/IEC 17025:1999 standard requires chemical testing laboratories to have an estimate of the uncertainty of their measurements. This is a new requirement for many laboratories and there is confusion as to how to estimate uncertainty. Concerns have been raised about the time and effort required to obtain uncertainty estimates.Uncertainty budgets were prepared for the measurement of benzene, toluene, ethyl benzene and xylenes (BTEX) in water using purge and trap coupled with GC/MS. A time limit of one working afternoon (2 pm–5.30 pm) was imposed for preparing the uncertainty estimate. Details of the uncertainty estimate for toluene are described.The method in question had been in routine use for several years and the laboratory held third party (NATA) accreditation for the test. Consequently a considerable amount of performance data was readily available. Relevant information was extracted from the documented test method, validation data, instrument calibration and from routine quality control. This data was combined according to the principles of the ISO Guide to the Expression of Uncertainty, as promulgated in the Eurachem document "Quantifying Uncertainty in Analytical Measurement."The uncertainty estimates were compared to estimates obtained from generalised empirical models (the Horwitz and Lowthian equations), and from interlaboratory studies of this analysis.A traceability chain from routine measurements to the SI units of metre, kilogram and mole is described.Realistic and useful uncertainty estimates were obtained with a few hours work using data extant in the laboratory.     

A SIFT ion-molecule study of some reactions in Titan's atmosphere. reactions of N(+), N(2)(+), and HCN(+) with CH(4), C(2)H(2), and C(2)H(4)

The results of a study of the ion-molecule reactions of N(+), N(2)(+), and HCN(+) with methane, acetylene, and ethylene are reported. These studies were performed using the FA-SIFT at the University of Canterbury. The reactions studied here are important to understanding the ion chemistry in Titan's atmosphere. N(+) and N(2)(+) are the primary ions formed by photo-ionization and electron impact in Titan's ionosphere and drive Titan's ion chemistry. It is therefore very important to know how these ions react with the principal trace neutral species in Titan's atmosphere: Methane, acetylene, and ethylene. While these reactions have been studied before the product channels have been difficult to define as several potential isobaric products make a definitive answer difficult. Mass overlap causes difficulties in making unambiguous species assignments in these systems. Two discriminators have been used in this study to resolve the mass overlap problem. They are deuterium labeling and also the differences in reactivities of each isobar with various neutral reactants. Several differences have been found from the products in previous work. The HCN(+) ion is important in both Titan's atmosphere and in the laboratory.