Miniaturized tools and devices for bioanalytical applications: an overview

This article presents an overview of various miniaturized devices and technologies developed by our group. Innovative, fast and cheap procedures for the fabrication of laboratory microsystems based on commercially available materials are reported and compared with well-established microfabrication techniques. The modules fabricated and tested in our laboratory can be used independently or they can be set up in different configurations to form functional measurement systems. We also report further applications of the presented modules e.g. disposable poly(dimethylsiloxane) (PDMS) microcuvettes, fibre optic detectors, potentiometric sensors platforms, microreactors and capillary electrophoresis (CE) microchips as well as integrated microsystems e.g. double detection microanalytical systems, devices for studying enzymatic reactions and a microsystem for cell culture and lysis.     

Spectroscopic Characterization of i-motif Forming c-myc Derived Sequences Double-Labeled with Pyrene

In current studies we use the oligonucleotides based on c-myc sequence: CCC CAC CCT CCC CAC CCT CCC C (cmyc22) and CCC CAC CCT CCC CAC CCT CCC CA (cmyc22A) functionalized by pyrene moieties at both termini. Results of the circular dichroism (CD), UV absorption melting experiments, and steady-state fluorescence measurements of pyrene-modified i-motifs as well as their unlabeled precursors are presented and discussed here. The pyrene labels have a remarkable influence on i-motif stability which was deduced from CD spectra and confirmed by UV melting experiments. Both probes emit fluorescence band of pyrene monomer with intensity decreasing upon pH lowering.     

Polypyrrole-coated cotton textile as adsorbent of methylene blue dye

Pollution caused by organic dyes is of serious environmental and health concern to the population. Dyes are widely used in textile coloring applications. In the present work, cotton textile was coated with a conducting polymer, polypyrrole (PPy), in situ during the oxidative polymerization of pyrrole. The resulting materials were utilized as easily separated and recyclable adsorbent for the removal of methylene blue (MB) as a model of cationic dyes in alkaline solutions. It showed also some affinity to remove Acid Green 25 as an anionic dye in acidic medium. The adsorption was assessed by monitoring the decrease in dye concentration by UV–Visible absorption spectroscopy. The influence of various parameters such as initial dye concentration, contact time, pH, temperature, and adsorbent dose on the adsorption process was studied. The pseudo-second-order kinetic model and Freundlich isotherm model were found to describe the adsorption process. The thermodynamic study revealed that the adsorption of MB by PPy was feasible, spontaneous, and exothermic process. Investigation of the substrate regeneration revealed that PPy deposited on cotton textile can be reused for dye adsorption several times with good efficiency and it allows for the recovery of MB for recycling purposes.     

Highly Porous Silica Monoliths from Ethyl (L)-Lactate Modified Silanes

Summary. A new type of silica precursor was synthesized by (trans)alkoxylation of alkoxy- and chlorosilanes with ethyl (L)-lactate. This novel ethyl lactate modified silane was hydrolyzed and condensed in the presence of a non-ionic surfactant – poly(ethylene oxide)–poly(propylene oxide)–poly(ethylene oxide) triblock copolymer (P123) – to give monolithic silica gels. The wet gels were dried using two different drying techniques resulting in crack-free monoliths: a) supercritical drying with CO₂ to yield a porous inorganic material and b) surface silylation with trimethylchlorosilane to yield an inorganic–organic nanocomposite material. The obtained porous gels were characterized by different techniques including thermal analysis, nitrogen sorption, and electron microscopy (TEM, SEM).     

Adsorption of water vapour from humid air in carbon molecular sieves: carbosieve S-III and carboxens 569, 1000 and 1001

The adsorption of water vapour in carbon molecular sieves (CMS) used to determine volatile organic compounds (VOCs) in air was investigated. The CMS mass in the trap was found not to affect the mass of retained water under conditions of incomplete saturation of the adsorbent bed with water. Thus, the restrictions commonly imposed on the CMS mass are not necessary. The usefulness of four different CMSs to sample large volumes of humid air was estimated. Carboxen 1000 exhibited the best performance. To assess the magnitude of CMS mass in the trap in dependence on the volume, the relative humidity and the temperature of the sample, the use of a novel parameter, called the water vapour interference factor, was suggested.     

The Comparison of Physicochemical Parameters,Antioxidant Activity and Proteins for the Raw Local Polish Honeys and Imported Honey Blends

Many imported honeys distributed on the Polish market compete with local products mainly by lower price, which can correspond to lower quality and widespread adulteration. The aim of the study was to compare honey samples (11 imported honey blends and 5 local honeys) based on their antioxidant activity (measured by DPPH, FRAP, and total phenolic content), protein profile obtained by native PAGE, soluble protein content, diastase, and acid phosphatase activities identified by zymography. These indicators were correlated with standard quality parameters (water, HMF, pH, free acidity, and electrical conductivity). It was found that raw local Polish honeys show higher antioxidant and enzymatic activity, as well as being more abundant in soluble protein. With the use of principal component analysis (PCA) and stepwise linear discriminant analysis (LDA) protein content and diastase number were found to be significant (p < 0.05) among all tested parameters to differentiate imported honey from raw local honeys.     

The impact of sterol structure on the interactions with sphingomyelin in mixed langmuir monolayers

In this work, the Langmuir monolayer technique was applied to study the interactions between sphingomyelin and various sterols differing in the structure of the side chain (cholesterol, beta-sitosterol, stigmasterol). The mean area per molecule and the excess free energy of mixing values were analyzed in the context of sterol-induced condensing effect and interactions between molecules in the mixed monolayers. Moreover, the compression modulus values were calculated and widely discussed from the point of view of the ordering effect of sterols. It was found that all of the sterols investigated form the most stable monolayers with sphingomyelin at 2:1 sphingomyelin:sterol proportion and the strongest interactions exist between molecules in cholesterol-containing films. Moreover, cholesterol provokes the strongest area condensation and reveals the highest ordering properties, while plant sterols were found to differ only slightly with regards to their ordering properties. Additionally, the ordering effect of the sterols on dipalmitoylphosphatidylcholine (DPPC) films was analyzed and compared to that on sphingomyelin films.     

Two-dimensional miscibility studies of alamethicin and selected film-forming molecules

Alamethicin (ALM), a 20-amino acid antibiotic peptide (peptaibol) from fungal sources, was mixed in Langmuir monolayers with six different surfactants: semifluorinated (F6H18, F10H19, F8H10OH, F6H10SH) and hydrogenated (C18SH and DODAC), aimed at finding appropriate molecules for ALM incorporation for nanodevice construction. Alamethicin-containing mixed monolayers were investigated by means of surface manometry (pi-A isotherms) and Brewster angle microscopy (BAM). Our results show that only semifluorinated alkanes can serve as an appropriate material since they form miscible and homogeneous monolayers with ALM within the whole concentration range. All the remaining surfactants, possessing polar groups, were found to demix with ALM. This effect was explained as being due to the existence of strong polar interactions between vertically oriented surfactant molecules, which tend to separate from horizontally oriented alpha-helices of the peptide. On the contrary, semifluorinated alkanes, lacking any polar group in their structure and bearing a large dipole moment, interact with ALM, also possessing a huge cumulative dipole moment. These dipole-dipole interactions between ALM and SFAs are more attractive than those between SFA molecules in their pure monolayers, causing the large ALM molecule, situated parallel to the interface, to be surrounded by SFA molecules in perpendicular orientation, leading to the formation of a highly organized binary mixed monolayer. BAM images of the ALM monolayer indicate that this peptide collapses with the nucleation and growth mechanism, like the majority of surfactants, which contradicts the model of ALM collapse by desorption, previously published in the literature.     

Theoretical study of cobalt and nickel complexes involved in methyl transfer reactions: structures,redox potentials and methyl binding energies

Structural Chemistry - Cobalamins, cobalt glyoximate complexes and nickel complexes with Triphos (bis(diphenylphosphinoethyl)phenylphosphine) and PPh2CH2CH2SEt ligands were studied with the...     

Amorphous Form of Carvedilol Phosphate—The Case of Divergent Properties

The amorphous form of carvedilol phosphate (CVD) was obtained as a result of grinding. The identity of the obtained amorphous form was confirmed by powder X-ray diffraction (PXRD), different scanning calorimetry (DSC), and FT-IR spectroscopy. The process was optimized in order to obtain the appropriate efficiency and time. The crystalline form of CVD was used as the reference standard. Solid dispersions of crystalline and amorphous CVD forms with hydrophilic polymers (hydroxypropyl-β-cyclodextrin, Pluronic^® F-127, and Soluplus^®) were obtained. Their solubility at pH 1.2 and 6.8 was carried out, as well as their permeation through a model system of biological membranes suitable for the gastrointestinal tract (PAMPA-GIT) was established. The influence of selected polymers on CVD properties was defined for the amorphous form regarding the crystalline form of CVD. As a result of grinding (four milling cycles lasting 15 min with 5 min breaks), amorphous CVD was obtained. Its presence was confirmed by the “halo effect” on the diffraction patterns, the disappearance of the peak at 160.5 °C in the thermograms, and the changes in position/disappearance of many characteristic bands on the FT-IR spectra. As a result of changes in the CVD structure, its lower solubility at pH 1.2 and pH 6.8 was noted. While the amorphous dispersions of CVD, especially with Pluronic^® F-127, achieved better solubility than combinations of crystalline forms with excipients. Using the PAMPA-GIT model, amorphous CVD was assessed as high permeable (Papp > 1 × 10⁻⁶ cm/s), similarly with its amorphous dispersions with excipients (hydroxypropyl-β-cyclodextrin, Pluronic^® F-127, and Soluplus^®), although in their cases, the values of apparent constants permeability were decreased.