The Rabe amination after a century: direct addition of N-heterocycles to carbonyl compounds

A catalytic version of the Rabe electrophilic amination is presented. This kind of reaction was originally employed in 1918 in a key step for the conversion of quinotoxine to quinine. Ketones and α-substituted aldehydes give the corresponding α-aminated carbonyl compounds in moderate yield. α,α-Unsubstituted aldehydes give rise to amino ketones via a novel rearrangement.     

Multi-use NBD-based tetra-amino macrocycle: fluorescent probe for metals and anions and live cell marker

Ligand L (4-(7-nitrobenzo[1,2,5]oxadiazole-4-yl)-1,7-dimethyl-1,4,7,10-tetra-azacyclododecane) is a versatile fluorescent sensor useful for Cu(II), Zn(II) and Cd(II) metal detection, as a building block of fluorescent metallo-receptor for halide detection, and as an organelle marker inside live cells. Ligand L undergoes a chelation-enhanced fluorescence (CHEF) effect upon metal coordination in acetonitrile solution. In all three complexes investigated the metal cation is coordinatively unsaturated; thus, it can bind secondary ligands as anionic species. The crystal structure of [ZnLCl](ClO(4)) is discussed. Cu(II) and Zn(II) complexes are quenched upon halide interaction, whereas the [CdL](2+) species behaves as an OFF-ON sensor for halide anions in acetonitrile solution. The mechanism of the fluorescence response in the presence of the anion depends on the nature of the metal ion employed and has been studied by spectroscopic methods, such as NMR spectroscopy, UV/Vis and fluorescence techniques and by computational methods. Subcellular localization experiments performed on HeLa cells show that L mainly localizes in spot-like structures in a polarized portion of the cytosol that is occupied by the Golgi apparatus to give a green fluorescence signal.     

Polyphenol content in white table grape (Vitis Vinifera) berries of cultivar Italia: interactive effect of irrigation, delayed harvest and storage

Polyphenol concentrations were quantified by rapid resolution liquid chromatography/mass spectrometry in white table grape. The experimental vineyard was subjected to different kinds of water supply and supply rates. Samples from the same vineyards were also analysed after 6 weeks of storage in a refrigerator and after 6 weeks of delayed harvesting. Berry skins and seeds were analysed separately. A statistical treatment of the screening kind, namely the 2(k) full factorial design, was used for the interpretation of results. Storage, delayed harvesting and the different kinds of water supply appeared to be the variables most affecting grape polyphenol content. In some cases, results showed that polyphenol content diminished by more than 50% after 6 weeks if the grapes were stored in a refrigerator, or if a sprinkler was used for irrigation.     

Electrostatic assembly of Ag nanoparticles onto nanofibrillated cellulose for antibacterial paper products

Nanofibrillated cellulose offers new technological solutions for the development of paper products. Here, composites of nanofibrillated cellulose (NFC) and Ag nanoparticles (NP) were prepared for the first time via the electrostatic assembly of Ag NP (aqueous colloids) onto NFC. Distinct polyelectrolytes have been investigated as macromolecular linkers in order to evaluate their effects on the building-up of Ag modified NFC and also on the final properties of the NFC/Ag composite materials. The NFC/Ag nanocomposites were first investigated for their antibacterial properties towards S. aureus and K. pneumoniae microorganisms as compared to NFC modified by polyelectrolytes linkers without Ag. Subsequently, the antibacterial NFC/Ag nanocomposites were used as fillers in starch based coating formulations for Eucalyptus globulus-based paper sheets. The potential of this approach to produce antimicrobial paper products will be discussed on the basis of complementary optical, air barrier and mechanical data.     

Second campaign of microclimate monitoring in the carcer tullianum: temporal and spatial correlation and gradients evidenced by multivariate analysis

Background

This paper discusses results obtained in the second monitoring campaign of the Carcer Tullianum, a particular hypogeum environment located in the historical centre of Rome (Italy). In the first paper we stressed the need to apply chemometric tools to this kind of studies in order to obtain full and significant information; really information on sampling design, sensors (type, number, position) and instrument validation seems to be not easy to find in literature for researches dealing with monitoring of indoor environments. Also in this case three main parameters (temperature, humidity, illuminance) were monitored in the complex construction by an inexpensive self-assembled system along some horizontal and vertical vectors together with some measurements of oxygen, carbon dioxide and barometric pressure. With respect to the first campaign, we used a higher number of sensors to cover a new excavated zone; for the same reason, as well as to take into account the presence of visitors, a different experimental design was adopted.

Results

Different data treatments were applied to data coming from all the used sensors. A good view of the microclimate was obtained that also resulted coherent with the different position of the three rooms constituting the monitored site (Carcer, Tullianum, Convent). Classical time plots resulted useful to evidence the correlation of the main monitored parameters (T, RH% and illuminance) with macroclimate, as well as their delay in following macroclimate. Box-Whisker and Gain-Loss graphs evidenced at the best the microclimate differences between the three rooms; an almost hypogean microclimate was evidenced for the lower room (Tullianum) where humidity values range between 90 and 100% while lower values, but anyway higher than the external, and spread more widely were measured passing to Convent and Carcer with minimum values around 50% for the last. A scarce or very scarce correlation with macroclimate was evidenced for all the three main measured parameters. Lighting results mainly dependent on artificial light and only in few cases, but unfortunately in the most precious zone, illuminance exceeds values suggested by Normative.

Conclusions

Box-Whisker and Gain-Loss graphs allowed us to have the best view of the microclimate for all the monitored rooms. The influence of lighting by lamps on the other monitored parameters resulted overlapped and clearly topped the solar one. The worst situation was found in the Carcer, where the presence of the main chandelier worsens the state of the frescoed walls, already subjected to wide changes in temperature and humidity. Also the lighthouse located above the Convent provokes lighting exceeding values suggested by Normative while, as expected, LEDs resulted as suitable source of light from a conservation point of view. Susanne Heidi Plattner, Patrizia Fortini and Maria Pia Sammartino contributed equally to this work     

On the continuity of minimizers for quasilinear functionals

In this paper we establish a continuity result for local minimizers of some quasilinear functionals that satisfy degenerate elliptic bounds. The non-negative function which measures the degree of degeneracy is assumed to be exponentially integrable. The minimizers are shown to have a modulus of continuity controlled by log log(1/|x|)⁻¹. Our proof adapts ideas developed for solutions of degenerate elliptic equations by J. Onninen, X. Zhong: Continuity of solutions of linear, degenerate elliptic equations, Ann. Sc. Norm. Super. Pisa Cl. Sci. (5) 6 (2007), 103–116.     

Parallelization of the deMon2k code

The parallelization of the LCGTO-KS-DFT code deMon2k is presented. The parallelization of the three-center electron repulsion integrals, the numerical integration using a direct grid algorithm and the matrix multiplication and diagonalization are described. The efficiency of the parallelization is analyzed by selected benchmark calculations. It is shown that geometry optimizations of systems with more than 8,000 basis functions are feasible on cluster architectures.     

DNA nanomachines and nanostructures involving quadruplexes

DNA is an attractive component for molecular recognition, because of its self-assembly properties. Its three-dimensional structure can differ markedly from the classical double helix. For example, DNA or RNA strands carrying guanine or cytosine stretches associate into four-stranded structures called G-quadruplexes or i-DNA, respectively. Since 2002, several groups have described nanomachines that take advantage of this structural polymorphism. We first introduce the unusual structures that are involved in these devices (i.e., i-DNA and G-quadruplexes) and then describe the opening and closing steps that allow cycling. A quadruplex-duplex molecular machine is then presented in detail, together with the rules that govern its formation, its opening/closing kinetics and the various technical and physico-chemical parameters that play a role in the efficiency of this device. Finally, we review the few examples of nanostructures that involve quadruplexes.     

2-[(R-phenyl)amine]-1,4-naphthalendiones as photosystem I electron acceptors: structure-activity relationship of m- and p-PAN compounds with QSAR analysis

Nineteen 2-[(R-phenyl)amine]-1,4-naphthalendione derivatives (PAN) were tested on spinach thylakoids for their activity as electron acceptors. These molecules act as photosystem I electron acceptors in the micromolar range. AC(50) values varied from 5 nM to 24 microM. QSAR analysis revealed a linear correlation of the m-PAN derivative log [1/AC(50)] with the energy difference of the LUMO and HOMO orbitals. The biological activity of p-PAN derivatives correlates linearly with structural parameters. Electron affinity is being the most important. The half wave I potential values (E(1/2)) of PAN compounds (from -213 to -569 mV vs. NHE) match with the mid-point potentials of the A(0) to F(X) niche of PSI electron transport carriers. The logP values of PAN derivatives were 3.35 and 3.88, indicating that they are hydrophobic compounds. Therefore PAN compounds accept electrons at the hydrophobic A(0) to F(X) niche of PSI.     

Comprehensive two-dimensional gas chromatography in the analysis of volatile samples of natural origin: a multidisciplinary approach to evaluate the influence of second dimension column coated with mixed stationary phases on system orthogonality

The study evaluates the influence of selectivity tuning of the stationary phase of the second dimension on the orthogonality of a comprehensive two-dimensional gas chromatography (GC x GC) system. Two different sets of columns, providing independent and semi-independent separation mechanisms were used. The first consisted of a first dimension separating analytes on a volatility basis (i.e. a non-polar polydimethylsiloxane (OV1) column) combined with a second dimension separating by polarity, using columns coated with 100% polyethylene glycol (CW20M), CW20M/OV1 mixtures in ratios of 25-75%, and polydimethylsiloxane, 7% phenyl, 7% cyanopropyl (OV1701). The second set consisted of a first dimension separating analytes on a polarity basis (100% CW20M column) combined with a second dimension separating by volatility, consisting of columns coated with 100% OV1, OV1/CW20M mixtures in ratios of 25-75%, and 100% OV1701. Medium-complexity mixtures of natural origin (i.e. peppermint essential oil and a standard mixture of suspected allergens) consisting of components in a relatively limited range of molecular weights (MW) and volatilities, but belonging to different classes of compounds in a wide range of polarity (mono- and sesquiterpenoids, hydrocarbons and oxygenated compounds) were analysed with the above sets of columns. Different approaches were used to evaluate peak spreading on the GC x GC separation plane and degree of orthogonality of the column sets, namely: (1) a Factor Analysis (FA) approach, estimating the correlation coefficients and spreading angles of the sample components in the two-dimensional chromatographic plane; (2) an Informational Theory (IT) approach, based on determining a group of parameters including: informational entropy, % synentropy and similarity (H); and (3) an approach based on estimating the amount of separation space used, i.e. a practical parameter that directly refers to the experimental separation plane of the GC x GC chromatogram. Results showed that peak spreading in the chromatographic plane, when CW20M and OV1 are combined in different ratios, can be predicted from retention mechanisms, and that the degree of orthogonality measured with different approaches, is consistent with the divergent nature, in terms of polarity of the stationary phases combined in the GC x GC system.