REALISIS: a medicinal chemistry-oriented reagent selection, library design, and profiling platform

REALISIS is a software system for reagent selection, library design, and profiling, developed to fit the workflow of bench chemists and medicinal chemists. Designed to be portable, the software offers a comprehensive graphical user interface and rapid, integrated functionalities required for reagent retrieval and filtering, product enumeration, and library profiling. REALISIS is component-based, consisting of four main modules: reagent searching; reagent filtering; library enumeration; and library profiling. Each module allows the chemist to access specific functionalities and diverse filtering and profiling mechanisms. By implementing the entire process of reagent selection, library design, and profiling and by integrating all the necessary functionalities for this process, REALISIS cuts the time required to design combinatorial and noncombinatorial libraries from several days to a few hours.     

Determination of clindamycin in animal plasma by high-performance liquid chromatography combined with electrospray ionization mass spectrometry

A method for the quantification of clindamycin in animal plasma using high-performance liquid chromatography combined with electrospray ionization mass spectrometry (LC/ESI-MS/MS) is presented. Lincomycin is used as the internal standard. The sample preparation includes a simple deproteinization step with trichloroacetic acid. Chromatographic separation is achieved on an RP-18 Hypersil column using gradient elution with 0.01 M ammonium acetate and acetonitrile as mobile phase. Good linearity was observed in the range 0-10 microg ml(-1). The limit of quantification of the method is 50 ng ml(-1) and the limit of detection is 1.3 ng ml(-1). The method was shown out to be of use for pharmacokinetic studies of clindamycin formulations in dogs.     

Microfiltration of protein solutions at thin film composite membranes

An experimental study of the interaction of the enzyme yeast alcohol dehydrogenase (YADH) with polysulfone thin film composite microfiltration membranes (Dow-Danmark) has been carried out. It was found that the membranes adsorbed only 3/4 of a monolayer of the enzyme under the conditions studied. Even so, under filtration conditions, the membrane permeation rate decreased continuously with time. This decrease in permeation rate was due neither to concentration polarisation nor to protein adsorption alone. However, it could be quantified using the standard blocking filtration law, which describes a decrease in pore volume due to deposition of protein in the interior structure of the membrane. Reversal of the membrane, so that the supporting matrix faced the feed solution, gave more stable permeation rates. Implications for the microfiltration of industrial fermentation broths are discussed.     

X-ray structure of physiological copper(II)-bis(L-histidinato) complex

The isolation and the X-ray crystal structure of physiological copper(II)-L-histidine complex are reported. The neutral five-coordinate complex shows distorted square pyramidal geometry with bidentate and tridentate L-histidine ligands. The basic character of the pendent imidazole group and H-bonding interactions of bidentate L-histidine ligand are important for copper transport. The unique structural features help explain the origin of its thermodynamic stability and kinetic reactivity in human blood along with the ternary copper(II)-amino acid complexes. The role of L-histidine in interaction with copper(II)-albumin, in cellular uptake of copper, and in treatment of Menkes disease can be studied using these results.     

Photochemistry of iminium salts : Electron transfer mechanisms for singlet quenching and photoaddition of n-electron donating alcohols and ethers

Several aspects of past and current studies in the area of iminium salt photochemistry are discussed. Investigations of olefin-iminium salt photoaddition and photocyclization reactions are reviewed and conclusions about electron-transfer pathways for fluorescence quenching and reaction are discussed. The results of recent studies of alcohol and ether photoaddition to 2-phenyl-1-pyrrolinium salts are presented. These C-C bond forming processes occur in moderate yields to produce β-amino alcohol or ether products. In addition, alcohols and ethers serve as efficient quenchers of pyrrolinium salt fluorescence. Rate constants for quenching appear to be dependent upon both the oxidation potential of the alcohols and ethers and the availability of C-H bond α to oxygen. This data along with deuterium isotope effects on quenching combine to suggest a common mechanism for both fluorescence quenching and photoaddition. The nature of this mechanism is tested using the comparative quenching effeciencies of the tertiary alcohols t-butyl alcohol and 1,2,2-trimethyl-1-cyclopropanol. The latter alcohol having a weak C-C bond adjacent to the hydroxyl function quenches the fluorescence of 2-phenyl-1-pyrrolium salts at a rate two orders of magnitude greater than for t-butyl alcohol. The observations made are interpreted in terms of a sequential electron-proton transfer mechanism for quenching and photoaddition. Lastly, the relationship of iminium salt photochemical studies to other investigations of electron-transfer photochemistry is discussed.     

单分散磁性纳米颗粒的制备及生物高分子在其上的组装

磁性纳米颗粒因其潜在的生物医学应用价值而成为纳米生物材料领域研究的前沿。本文综述了单分散磁性纳米颗粒的制备方法以及生物高分子在磁性纳米颗粒上的组装的研究进展。     

Two dimensional reversed-phase-reversed-phase separations isomeric separations incorporating C18 and carbon clad zirconia stationary phases

Informational theory and a geometric approach to factor analysis were employed to evaluate the degree of orthogonality of a two-dimensional reversed-phase-reversed-phase chromatographic system. The system incorporated a C18 column as one dimension and a carbon clad zirconia column as the second dimension. In order to study the resolving power of this system, the separation of a sample matrix containing an artificial mix of 32 isomers (structural and diastereoisomers) was evaluated. Using this system, between 25 and 28 of the 32 isomers could be separated, depending on the mobile phase combinations--with resolution that could not possibly be achieved in a single one dimensional separation. The results from this study indicate that in order to fully evaluate the resolving power of a 2D system multiple methods of analysis are most appropriate. This becomes increasingly important when the sample contains components that are very closely related and the retention of solutes is clustered in one quadrant of the 2D space. Ultimately, the usefulness of the 2D separation is determined by the goals of analyst.     

Rearrangement of phenylethenes on reaction with iodine-xenon difluoride

Phenyl-substituted ethenes react with iodine and xenon difluoride to provide difluorinated products. Iodofluoro intermediates react with xenon difluoride to produce transient iodine difluoride species that lose IF and F(-) and produce carbocations.     

Computational studies of Cu(II)/Met and Cu(I)/Met binding motifs relevant for the chemistry of Alzheimer's disease

A systematic study of the binding motifs of Cu(II) and Cu(I) to a methionine model peptide, namely, N-formylmethioninamide 1, has been carried out by quantum chemical computations. Geometries of the coordination modes obtained at the B3LYP/6-31G(d) level of theory are discussed in the context of copper coordination by the peptide backbone and the S atom of a methionine residue in peptides with special emphasis on Met35 of the amyloid-beta peptide (Abeta) of Alzheimer's disease. The relative binding free energies in the gas phase, DeltaG(g), are calculated at the B3LYP/6-311+G(2df,2p)//B3LYP/6-31G(d) level of theory, and the solvation affects are included by means of the COSMO model to obtain the relative binding energies in solution, DeltaG(aq). A free energy of binding, DeltaG(aq) = -19.4 kJ mol(-1), relative to aqueous Cu(II) and the free peptide is found for the most stable Cu(II)/Met complex, 12. The most stable Cu(I)/Met complex, 23, is bound by -15.6 kJ mol(-1) relative to the separated species. The reduction potential relative to the standard hydrogen electrode is estimated to be E degrees (12/23) = 0.41 V. On the basis of these results, the participation of Met35 as a low affinity binding site of Cu(II) in Abeta, and its role in the redox chemistry underlying Alzheimer's disease is discussed.     

PtBr2-catalyzed consecutive enyne metathesis-aromatization of 1-(1-methoxy-but-3-enyl)-2-(1-alkynyl)benzenes: dual role of the Pt catalyst

1,7-Enynes 1, connected through an aromatic ring and bearing a leaving methoxy group at the 4-position, underwent the PtBr(2)-catalyzed enyne metathesis followed by aromatization in one pot to afford vinyl naphthalenes 3 in good to acceptable yields. The cyclobutene intermediate 11a and another intermediate 2a were isolated, indicating that PtBr(2) acts as a dual role catalyst: (1) as a transition metal catalyst, it induces the enyne metathesis to produce 11a starting from 1a, and (2) as a Lewis acid catalyst, it facilitates elimination of MeOH from 2a to give the aromatized product 3a.