Extraction of palladium(II) by the hexachloroderivate of cobalt dicarbolide from nitric acid medium

Liquid—liquid extraction of divalent palladium by solutions of the hexachloroderivate of cobalt dicarbolide (HBCl₆) in the mixture of solvents (30 v/v % nitrobenzene+20 v/v % n-dodecane +50 v/v/ % toluene) from nitric acid medium has been studied. Besides HBCl₆ the organic phase contained also 2,2′-dipyridyl (dipy). The yield of palladium extraction from 0.5M HNO₃ is greater than 99.0%. The species extracted into the organic phase corresponds to the formula [Pd(dipy)₂] (BCl₆)₂.     

Usefulness of the direct coupling headspace-mass spectrometry for sensory quality characterization of virgin olive oil samples

The applicability of the headspace coupled to mass spectrometry for evaluation of the sensory quality of virgin olive oil samples is presented. The volatiles of the oil are directly transferred from the sample vial to the detector without chromatographic separation. The mass spectrum obtained can be considered as a fingerprint of the oil sample and can be used for classification purposes. After a training step with samples previously qualified following the official method, a classification model was created using the supervised technique soft independent modeling of class analogy (SIMCA). Eight negative (rancid, winey-vinegary, muddy sediment, hay-wood, vegetable water, earthy, fusty and musty-humidity) and three principal positive attributes (fruity, bitter and pungent) have been included in this study. With them, a classification model consisting of two main classes (extra- and lampante-virgin olive oil) was constructed. In addition, the unsupervised technique cluster analysis permited the discrimination among oils with different negative attributes. The proposed procedure has been applied to the classification of commercial samples (as extra- or lampante-virgin olive oils) and the results were compared with those provided by the expert's panel with acceptable correlation.     

Interaction of a peptide from the pre-transmembrane domain of the severe acute respiratory syndrome coronavirus spike protein with phospholipid membranes

The severe acute respiratory syndrome coronavirus (SARS-CoV) envelope spike (S) glycoprotein, a Class I viral fusion protein, is responsible for the fusion between the membranes of the virus and the target cell. In order to gain new insight into the protein membrane alteration leading to the viral fusion mechanism, a peptide pertaining to the putative pre-transmembrane domain (PTM) of the S glycoprotein has been studied by infrared and fluorescence spectroscopies regarding its structure, its ability to induce membrane leakage, aggregation, and fusion, as well as its affinity toward specific phospholipids. We demonstrate that the SARS-CoV PTM peptide binds to and interacts with phospholipid model membranes, and, at the same time, it adopts different conformations when bound to membranes of different compositions. As it has been already suggested for other viral fusion proteins such as HIV gp41, the region of the SARS-CoV protein where the PTM peptide resides could be involved in the merging of the viral and target cell membranes working synergistically with other membrane-active regions of the SARS-CoV S glycoprotein to heighten the fusion process and therefore might be essential for the assistance and enhancement of the viral and cell fusion process.     

Morphology of bile salt micelles as studied by computer simulation methods

The relative arrangement of the neighboring bile ions and the shape of the hydrophobic and hydrogen-bonded primary micelles as well of the large secondary micelles formed by these ions are analyzed in detail on the basis of molecular dynamics computer simulations of 30 and 300 mM sodium cholate and sodium deoxycholate solutions. In the lower concentration considered, the systems only contain primary micelles, whereas in both of the 300 mM systems secondary micelles are also present. The simulations performed were long enough that the systems reached thermodynamic equilibrium. It is found that the neighboring cholate ions prefer alignments in which their quasi-planar tetracyclic ring systems are parallel with each other, whereas for deoxycholate an opening of the angle between these planes is observed. The shape of the micelles is characterized by the ratio of their three principal moments of inertia. The primary deoxycholate micelles are found to be rather spherical, whereas in the case of cholate somewhat flattened, disklike or oblate shaped ellipsoidal primary micelles are found, irrespective of whether these micelles are kept together by hydrogen bonds or are of hydrophobic origin. Finally, the secondary micelles are found to exhibit a large variety of shapes, ranging from flattened oblates to rodlike objects through various different irregular shapes, characterized by markedly different values of the three principal moments of inertia. The observed preferences of the relative arrangement of the neighboring ions and of the aggregate shapes as well as the differences observed in the behavior of the two bile ions studied in these respects are traced back to the molecular structure of these ions.     

Inverse gas chromatography study on the effect of humidity on the mass transport of alcohols in an ethylene-vinyl alcohol copolymer near the glass transition temperature

Inverse gas chromatography (IGC) was used to study the effect of moisture on transport properties of three low molecular weight alcohols (methanol, ethanol, and 1-butanol) through high barrier copolymers of ethylene-vinyl alcohol with an ethylene content of 38%mol (EVOH38) at 40 degrees C. The value of the partition coefficient (K) was obtained by using two approaches: (a) the fit of the slope of sorption isotherms obtained through the method of Kiselev and Yashin; and (b) the solution to the model of Romdhane and Danner obtained by using the law of moments. The second method also allowed the estimation of the diffusion coefficient (D(p)) at the different humidity conditions. None of these two methods were applicable at low values of relative humidity. With the first method, the diffusion of the permeants through the copolymer was not fast enough to allow them to reach the core of the EVOH particles used as stationary phase resulting in sorption values unrealistically low. The fit of the chromatograms obtained by using the second method also suggested questionable values of the mass transport parameters. Although the theoretical curve perfectly described the chromatogram, the low extent of the interaction and the slow diffusion resulted in interdependent values of the coefficients K and D(p), with infinite pairs of values providing the same curve profile. As the relative humidity of the carrier gas increased, the diffusivity and the sorption of the alcohols also increased, making both methods applicable. In the case of the partition coefficient, the sorption of the biggest molecules (ethanol and 1-butanol) was the most affected, the increment of K for methanol being moderate. As regards the D(p) value, methanol was the most influenced compound and 1-butanol the least. Finally, a sharp increment of the D(p) of the three alcohols was observed between 35 and 47% RH and attributed to the plasticization of the copolymer.     

The hydrogen-bonding network in heme oxygenase also functions as a modulator of enzyme dynamics: chaotic motions upon disrupting the H-bond network in heme oxygenase from Pseudomonas aeruginosa

Relaxation compensated Carr-Purcell-Meiboom-Gill (rc-CPMG) NMR experiments have been used to investigate micros-ms motions in heme oxygenase from Pseudomonas aeruginosa (pa-HO) in its ferric state, inhibited by CN- (pa-HO-CN) and N3- (pa-HO-N3), and in its ferrous state, inhibited by CO (pa-HO-CO). Comparative analysis of the data from the three forms indicates that the nature of the coordinated distal ligand affects the micros-ms conformational freedom of the polypeptide in regions of the enzyme far removed from the heme iron and distal ligand. Interpretation of the dynamical information in the context of the crystal structure of resting state pa-HO shows that residues involved in the network of structural hydrogen-bonded waters characteristic of HOs undergo micros-ms motions in pa-HO-CN, which was studied as a model of the highly paramagnetic S = 5/2 resting state form. In comparison, similar motions are suppressed in the pa-HO-CO and pa-HO-N3 complexes, which were studied as mimics of the obligatory oxyferrous and ferric hydroperoxide intermediates, respectively, in the catalytic cycle of heme degradation. These findings suggest that in addition to proton delivery to the nascent Fe(III)-OO(-) intermediate during catalysis, the hydrogen-bonding network serves two additional roles: (i) propagate the electronic state (reactive state) in each of the distinct steps of the catalytic cycle to key but remote sections of the polypeptide via small rearrangements in the network of hydrogen bonds and (ii) modulate the conformational freedom of the enzyme, thus allowing it to adapt to the demanding changes in axial coordination state and substrate transformations that take place during the catalytic cycle. This idea was probed by disrupting the hydrogen-bonding network in pa-HO by replacing R80 with L. NMR spectroscopic studies conducted with R80L-pa-HO-N3 and R80L-pa-HO-CO revealed that the mutant exhibits nearly global conformational disorder, which is absent in the equivalent complexes of the wild type enzyme. The "chaotic" disorder in the R80L mutant is likely related to its significantly lower efficiency to hydroxylate heme in the presence of H2O2, relative to the wild type enzyme.     

Cu-catalyzed tandem C-N bond formation for the synthesis of pyrroles and heteroarylpyrroles

A highly efficient Cu-catalyzed tandem C-N bond-forming reaction of 1,4-dihalo-1,3-dienes has been developed. The transformation allows the synthesis of pyrroles and heteroarylpyrroles with a wide variety of functional groups and substitution patterns from readily available precursors.