N-Mannich bases of benzimidazole as a potent antitubercular and antiprotozoal agents: Their synthesis and computational studies

Abstract

This article dealing with the microwave assisted synthesis of N-Mannich bases of pyridine clubbed with two different benzimidazole cores with their micromolar biological potency. All the synthesized compounds were evaluated for their in-vitro antibacterial, antimycobacterial and antiprotozoal potency. One of the final compound was found to be most active against M. tuberculosis (MIC = 3.125?µM) in the primary screening. N-Mannich bases of benzimidazole with pyridine-3-amine and 5-methyl-pyridine-2-amine showed potency against L. mexicana and T. cruzi respectively with IC₅₀ value 0.25 and 1.02?µg/mL. Compound 4a showed good binding energy in the active pocket of receptor (PDB: 4cod) with ?11.013 docking score. The stability of docked complex was validated by performing Molecular dynamics (MD) up to 20?ns simulation time. In silico ADME parameters and toxicity predicted that the active compounds belong to the Class IV GHS with LD₅₀ value 1360?mg/kg and hence found to be mildly toxic.     

Patenting computer-designed peptides

The problem of designing new peptides that possess specific properties, such as bactericidal activity, is of wide interest. Recently, attention has focused on the use of Computer-Aided Molecular Design techniques in parallel with more traditional 'synthesise and test' methods. These techniques may typically use Genetic Algorithms to optimise molecules based on Neural Network models that predict activity. In this paper we describe a successful application of this Molecular Design methodology that has resulted in novel bactericidal peptides of real value. A key issue for commercial utilisation of such results is the ability to protect the intellectual property rights associated with the discovery of new molecules. Typically peptide patents use structural templates of amino acid hydrophobicity-hydrophilicity that define highly regular peptide patent spaces. In an extension of established patenting practice we describe a patent application that uses a Neural Net predictive model to define the regions of peptide space that we claim within the patent. This formalism makes no a priori assumptions about the regularity of the patent space. A preliminary comparative investigation of the shape and size of this and other bactericidal peptide patent spaces is conducted.     

Thermal behaviour of resorcinol-1,2-dichloroethane resin

Resorcinol-1,2-dichloroethane resin was prepared by Friedel-Craft polymerization from resorcinol and 1,2-dichloroethane. The resin sample was characterised by IR and UV spectra and the average molecular weight was determined by vapour pressure osmometry. Kinetic parameters from TG and DTA thermograms are reported.     

Equilibrium/nonequilibrium initial configurations in forward/reverse electron transfer within mixed-metal hemoglobin hybrids

In a protein-protein electron transfer (ET) photocycle, the "forward" ET reaction is initiated with the excited complex, [3DA], in an equilibrium ensemble of configurations, the majority of which exhibit less than the maximal ET matrix element. In contrast, the charge-separated intermediate complex is formed in a nonequilibrium set of configurations with maximal ET matrix elements and would be expected to return to the ground state with the largest rate constant possible unless conformational interconversion first "breaks the connection" and the complex converts to less-reactive substates. According to this analysis, the forward and back ET reactions should show a differential response to viscosity, and the latter could even show an increased rate constant under conditions which suppress departure from the reactive configuration(s). We now report that the viscosity dependences of forward and back ET rate constants for the photocycle within the [alpha2(Zn),beta2(Fe3+N3-)] mixed-metal hemoglobin hybrid at pH 7 show the anticipated behavior: kf decreases as viscosity increases, but, in sharp contrast, kb increases strongly.     

A new route for isoquinolines catalyzed by palladium

3-Bromopyridine-4-carbaldehyde is tethered with suitably electron withdrawing group substituted alkenes via Heck coupling followed by aldol reaction in dioxane at 150 °C under a catalytic system of Pd(OAc)₂/PPh₃/NaOAc to afford the corresponding isoquinolines in good yields.     

Poly-Schiff bases. I. Preparation of poly-Schiff bases from 4,4′-diacetyl diphenyl ether (DDE) with various diamines

Thermally stable and semiconducting poly-Schiff bases are synthesized by condensing 4,4′-diacetyl diphenyl ether with o-, m-, and p-phenylene diamines, benzidine, and ethylene diamine under different experimental conditions. These bases are insoluble in common organic solvents. They are characterized by infrared (IR) and viscosity measurements, thermal analysis, and the study of electricel properties at various temperatures. Variation of electrical conductivity σ with temperature followed the empirical relation σ = σ₀e^?E*/kT.     

Fingerprint analysis of Shankhpushpi for species discrimination by HPLC coupled with chemometric methods

Abstract

Shankhpushpi, traded in the Indian market is having different controversial botanical sources, that is, Convolvulus pluricaulis Choisy (Convulvulaceae), Clitoria ternatea Linn. (Papilionaceae), and Evolvulus alsinoides Linn. (Convulvulaceae). Simple, accurate and precise RP-HPLC-PDA method was established for quality assessment and discrimination of Shankhpushpi samples using chromatographic profiling method. In distinction to the routine method of quality assessment which uses single or dual marker peaks, all chromatographic data (retention times/variables) were used. Fifteen shankhpushpi samples were purchased from the market including authenticated samples of all three C. pluricaulis, C. ternatea, E. alsinoides. A total of 18 samples were analyzed by HPLC and the dataset was then treated with multivariate analyses like PCA and HCA by using MINITAB software. Thus, the developed method was useful in discriminating the Shankhpushpi samples and for the perseverance of quality control.     

Remarkable solvent effect in Barton-Zard pyrrole synthesis: application in an efficient one-step synthesis of pyrrole derivatives

A unique solvent effect encountered in the Barton-Zard pyrrole synthesis was exploited to develop an efficient synthesis of pyrrole-2-esters. The chemistry was extended to a one-pot synthesis of pyrrole-2,4-dicarboxylates.     

Natural polyene α-pyrones. Total synthesis of citreomontanin from penicillium pedomontanum.

A total synthesis of all-$\text{E}$-citreomontanin (7), a novel polyene α-pyrone produced by $\text{Penicillium pedomontanum}$, is described.     

Growth morphology of isotactic polybutene-1

Isotactic polybutene-1 has been crystallized from solution by the film formation method. Well-defined single crystals have been grown from solutions of the polymer in amyl acetate and its mixtures with n-butanol in all the three modifications by varying the concentration and crystallization temperature. Multilayered orthorhombic, tetragonal and hexagonal crystals with spiral ramps and terraces have been obtained from concentrated solutions near the turbidity temperature. Rotation of the screw dislocation as well as interlacing multilayered growth have been observed in the tetragonal morphology. Different types of twinning are commonly observed in the orthorhombic and hexagonal modifications. It is suggested that (a) spiral ramps grow by the mechanism of screw dislocation, (b) terraced crystals grow by the mechanism of Frank-Read source or the basal lamellae being hairy on the molecular level nucleating the next lamella, (c) movement of screw dislocation is very common in the orthorhombic and hexagonal modifications, (d) the solution temperature does not affect the morphology but the solvent concentration and the crystallization temperature decide the growth habit of the single crystals and (e) the growth mechanism of multilayered crystals and twinning are similar to those of monomeric substances.