Supramolecular Arrangement and DFT analysis of Zinc(II) Schiff Bases: An Insight towards the Influence of Compartmental Ligands on Binding Interaction with Protein

We report, for the first time, a detailed crystallographic study of the supramolecular arrangement for a set of zinc(II) Schiff base complexes containing the ligand 2,6-bis((E)-((2-(dimethylamino)ethyl)imino)methyl)-4-R-phenol], where R=methyl/tert-butyl/chloro. The supramolecular study acts as a pre-screening tool for selecting the compartmental ligand R of the Schiff base for effective binding with a targeted protein, bovine serum albumin (BSA). The most stable hexagonal arrangement of the complex [Zn − Me] (R=Me) stabilises the ligand with the highest FMO energy gap (ΔE=4.22 eV) and lowest number of conformations during binding with BSA. In contrast, formation of unstable 3D columnar vertebra for [Zn − Cl] (R=Cl) tend to activate the system with lowest FMO gap (3.75 eV) with highest spontaneity factor in molecular docking. Molecular docking analyses reported in terms of 2D LigPlot+ identified site A, a cleft of domains IB, IIIA and IIIB, as the most probable protein binding site of BSA. Arg144, Glu424, Ser428, Ile455 and Lys114 form the most probable interactions irrespective of the type of compartmental ligands R of the Schiff base whereas Arg185, Glu519, His145, Ile522 act as the differentiating residues with ΔG=−7.3 kcal mol⁻¹.     

Existence of Continuous Eigenvalues for a Class of Parametric Problems Involving the $(p,2)$-Laplacian Operator

We discuss a parametric eigenvalue problem, where the differential operator is of \((p,2)\)-Laplacian type. We show that, when \(p\neq 2\), the spectrum of the operator is a half line, with the end point formulated in terms of the parameter and the principal eigenvalue of the Laplacian with zero Dirichlet boundary conditions. Two cases are considered corresponding to \(p>2\) and \(p<2\), and the methods that are applied are variational. In the former case, the direct method is applied, whereas in the latter case, the fibering method of Pohozaev is used. We will also discuss a priori bounds and regularity of the eigenfunctions. In particular, we will show that, when the eigenvalue tends towards the end point of the half line, the supremum norm of the corresponding eigenfunction tends to zero in the case of \(p>2\), and to infinity in the case of \(p < 2\).

     

Recent advances in Garratt-Braverman cyclization: Mechanistic and synthetic explorations

Garratt-Braverman cyclization has emerged as one of the simplest synthetic tool to construct two consecutive CC bonds leading to the formation of various important structural scaffolds having significance in the field of therapeutics and material science. The strategic design of suitable precursor for this cycloaromatization reaction involves the deep understanding of reaction pathways involving diradicals and ions. On the other hand, the reaction offers an unprecedented mechanistic paradox for the chemists to solve. This report aims at outlining the recent mechanistic and synthetic developments with special emphasis on the research outcomes from our laboratory.     

Graphene oxide (GO) catalyzed transamidation of aliphatic amides: An efficient metal-free procedure

Transamidation involves direct interconversion of an amide with amine, and represents an alternative to the common method of amide formation from the reaction of carboxylic acid with an amine. While the carboxamides have huge potential in biological systems and polymer industries, their formation from carboxylic acids requires activation by a suitable catalyst. A metal-free transamidation of aliphatic amide with aromatic amine catalyzed by graphene oxide (GO) has been developed and established as a general, synthetically useful and selective procedure. Graphene oxide bearing several carboxylic acids on the edges and having large surface area acts as an efficient and recyclable catalyst for transamidation.     

Hydrogen bonding cooperativity of water to nucleotide recognition: structure of octadecahydrated inosine 5′-monophosphate, 2(C10H12N4O8P)·18H2O at atomic resolution

The crystal structure of an octadecahydrated complex between two inosine 5-monophosphate (IMP) has been determined at atomic resolution, which reveals the hydrogen bonding and the coordination cooperativity of water molecules to nucleotide recognition. The crystal belongs to monoclinic space group P2₁ with cell dimensions a = 8.65(1), b = 21.90(1), c = 12.37(1)Å, and = 110.38(9)°. The ribose hydroxyls, purine N7, keto(O6) bonded water molecules W1, W2, W5, W6, W8 and the phosphate bridge forming water oxygens of W4, W7, W11 appear to play an invariant role in their hydrogen bonding interactions with the IMPs. The synergistic role of the water molecules W5, W6, W8 in the purine staking domain N27W5=2.583,O16W8=2.759,O2627W6=2.723 Åhave been clearly observed for the first time. The complexation of the water molecules through variable hydrogen bonding coordination indicate their functional involvement through extensive cooperative donor-acceptor network mechanism. The occurrence of hydrogen-bonded water spines, water bridges and their interplay in the structural association of IMPs could indicate the possible viability of those aquatic centers in the biological situation.     

Physicochemical studies on the interaction of gelatin with cationic surfactants alkyltrimethylammonium Bromides (ATABs) with special focus on the behavior of the hexadecyl homologue

The interaction of a denatured interfacially active protein, gelatin (G) (at pH 9, above its isoelectric pH 4.84, and ionic strength mu=0.005), with a cationic amphiphile, hexadecyl (or cetyl) trimethylammonium bromide, CTAB, has been elaborately studied using a variety of techniques. Two types of protein-surfactant complexes at a concentration below the normal critical micellar concentration (cmc) were formed in solution. The first, G-CTAB (monomer) combined complex (GS(n)(I)) adsorbed at the air/solution interface, followed by its gradual transformation to the poor interfacially active second G-CTAB (aggregate) complex (GS(m)(B)) at a critical aggregation concentration (cac) of the interacting oppositely charged surfactant. In the higher concentration range, upon completion of GS(m)(B) formation, coacervation (association of GS(m)(B)) led to add turbidity. With increasing addition of CTAB, the coacervates became disintegrated and ultimately remained dissolved in the free micellar solution of CTAB. The above features were studied using the techniques of tensiometry, conductometry, turbidimetry, fluorimetry, and microcalorimetry. The interaction features were prominent at [G] >or= 0.05 g %, and several of these were either marginal or absent at [G]<0.05 g %. The denatured protein was found to form viscous as well as gel-forming consistencies at higher [G] and at lower temperature. A temperature variation study on the interaction of G with CTAB has revealed that enhanced interaction takes place at higher temperature. The effect of [G] on its interaction with cationic surfactants of varying chain length in the alkyltrimethylammonium bromide (ATAB) series has been also studied; a similar interactional profile as that of CTAB has been exhibited by octadecyltrimethylammonium bromide; however, the lower homologues (dodecyl- and tetradecyl-) of ATAB have offered different profiles. It has been found that the ATABs with higher alkyl chain lengths were more interactive with negatively charged G than their lower homologues. Quantification of the results in terms of different transition points, counterion binding of the protein-bound surfactant aggregates and free micelles, the enthalpy of binding interactions and energetics of ATAB micellization, and so forth have been studied. The results have been rationalized in terms of an interaction model.     

Modulated photophysics of 3-pyrazolyl-2-pyrazoline derivative entrapped in micellar assembly

The photophysical behavior of 3-pyrazolyl-2-pyrazoline derivative (PZ), a newly synthesized biologically active compound has been studied in micellar solutions of anionic sodium dodecyl sulfate (SDS), cationic cetyl trimethylammonium bromide (CTAB) and nonionic p- tert-octylphenoxy polyoxyethanol (Triton X-100, TX-100) micelle using steady state and time-resolved fluorescence spectroscopy technique. Influence of the micelles on the photophysics of PZ has also been investigated using different approaches. The location of the fluorophore PZ in the micelle has been identified by cetyl pyridinium chloride (CpCl) induced fluorescence quenching and micropolarity surrounding that fluorophore in micellar solution. The effect of urea on the steady state fluorescence and relaxation dynamics of the micelle bound probe has also been observed. The results have been interpreted in terms of the model that urea displaces water molecules from the micellar interface and the consequent destabilization leads to the expulsion of the probe molecules from the interfacial region. An attempt has been made to determine probe sensing microviscosities for these micellar microenvironments in the light of average reorientation times of the probe PZ.     

Synthesis of rimonabant regioisomer

A novel synthesis route for a rimonabant regioisomer was developed. Correspondence: Rakeshwar Bandichhor, Innovation Plaza, IPD, R&D, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46 & 54, Bachupally, Qutubullapur, R. R. Dist. 500073, A.P., India; Chitneni Prasad Rao, Department of Chemistry, Osmania University, Hyderabad 5000007, A.P., India.     

Thermal hysteresis of some important physical properties of nanoparticles

Gold nanoparticles show thermal hysteresis with properties such as surface plasmon absorption, conductivity, and zeta potential. The direction of the incremental change in plasmon peak position and its extinction depend on the nature of surface conjugation. The thermal profile of a surface plasmon resonance spectrum for nanoparticles may serve as a signature for the associated small molecule or macromolecule on which it is seeded. The thermal responses of zeta potential and conductivity profile are found to be independent of the surface conjugation with the later being subjected to a phase transition phenomenon as revealed by a temperature criticality.     

DNA-templated assemblies of nickel hexacyanoferrate crystals

We report here the synthesis of nickel hexacyanoferrate (NiHCF) crystals using calf thymus DNA (CT-DNA) as a template. The double-stranded CT-DNA has been used as a template to self-assemble NiHCF crystals and to produce aggregates having different morphologies at different temperatures. The guided self-assembly behavior of DNA was studied at different temperatures by scanning electron microscopy. The cube-shaped crystals of NiHCF with an average diameter of 400 nm are observed along the DNA framework at room temperature; however, at higher temperatures, the morphology of NiHCF changed from open tubular to dendrimer. The intermediate temperatures show long chains (up to many micrometers) and spherical structures of NiHCF crystals. The micrometer long DNA template plays a key role in the formation of extended arrays of NiHCF crystals, suggesting that the templating action is retained even at the higher temperatures.