Discovery of a small molecule that inhibits the interaction of anthrax edema factor with its cellular activator, calmodulin

The catalytic efficiency of adenylyl cyclase activity of edema factor (EF) from Bacillus anthracis is enhanced by approximately 1000-fold upon its binding to mammalian protein calmodulin (CaM). A tandem cell-based and protein binding-based screen of a 10,000 member library identified a molecule that inhibits the EF-CaM interaction and therefore the adenylyl cyclase activity. A combination of fluorescence spectroscopy and photolabeling studies showed that the molecule targets the CaM binding region of EF. A series of related compounds were synthesized and evaluated to identify one compound, 4-[4-(4-nitrophenyl)-thiazolylamino]-benzenesulfonamide, that maintained activity against EF but showed minimal toxicity to two cultured cell lines. This compound represents an important reagent to study the role of EF in anthrax pathology and may represent a drug lead against anthrax infection.     

Fragmentation of deprotonated N-benzoylpeptides: Formation of deprotonated oxazolones

The fragmentation reactions of deprotonated N-benzoyl peptides, specifically hippurylglycine, hippurylglyclyclycine, and hippurylphenylalanine (hippuryl = N-benzoylGly) have been studied using MS2 and MS3 experiments as well as deuterium labeling. A major fragment ion is observed at m/z 160 ([C9H6NO2]-) which, upon collisional activation, mainly eliminates CO2 indicating that the two oxygen atoms have become bonded to the same carbon. This observation is rationalized in terms of formation of deprotonated 2-phenyl-5-oxazolone. Various pathways to the deprotonated oxazolone have been elucidated through MS3 experiments. Fragmentation of deprotonated N-acetylalanylalanine gives a relatively weak signal at m/z 112 which, upon collisional activation, fragments, in part, by loss of CO2 leading to the conclusion that the m/z 112 ion is deprotonated 2,4-dimethyl-5-oxazolone.     

Fragmentation and reaction processes in cluster-surface collisions

We review the processes which have been observed from collisions between alkali-halide clusters and solid surfaces. Soft impact of nanocrystalline Na_nF _n?1 ⁺ clusters against solid surfaces causes them to cleave along the lowest energy (100) plane. At higher collision energies (E_i>1 eV/atom), an evaporative cascade occurs which is characteristic of a transformation of the nanocrystal to a molten state. Efficient F^? transfer from the cluster to the surface can occur for the larger clusters (>60 atoms) scattering from Si(111), in direct competition with the cleaving channel at low energies. In this regime, strong bonds can form between the F^? and silicon surface. The reaction probability increases with cluster size indicating that an impact-initiated shock wave is needed to enhance the reactive process.     

Characterization of C8H10 alkylbenzenes by negative ion mass spectrometry

The O^?˙ chemical ionization mass spectrri of the C₈H₁₀ alkylbenzenes, o-, m-. andp -xylene and ethylbenzene, show formation of [M ? H + O]^?, [M ? H]^?, [M ? H₂]^?˙ and, for the xylenes, [M ? CH₃ + O]^? as primary reaction products; the relative importance of these products depends on the isomer. However, [OH]^? is a primary product from reaction of O^?˙ with both the C₈H₁₀ isomers and hydrogen-containing impurities; [OH]^? reacts further with the alkylbenzenes to produce [M ? H]^? with the result that the chemical ionization mass spectra depend on experimental conditions such as sample size and the presence of impurities. The collision-induced charge inversion mass spectra of the [M ? H + O]^? and [M ? H]^? products allow only distinction of ethylbenzene from the xylenes. However, the collision-induced charge inversion mass spectra of the [M ? H₂]^?˙ ions show differences which allow identification of each isomer.     

Low-energy mass spectra of some aliphatic ketones

The charge exchange mass spectra of a selection of C₅-C₇ ketones have been measured using [CS₂]⁺˙, [COS]⁺˙ and [N₂O]_+. as reagent ions. The low energy charge exchange with [CS₂]⁺˙ or [COS]⁺˙ provides simple primary ion mass spectra, which readily permit structure elucidation in contrast to metastable ion spectra. In several cases, isomer distinction is easier from the charge exchange mass spectra than from the electron impact mass spectra. The energy transfer from [N₂O]⁺˙ is sufficiently high for complex spectra resembling electron impact mass spectra to be obtained.     

Hydrogen migrations in mass spectrometry. I—The loss of olefin from phenyl-n-propyl ether following electron impact ionization and chemical ionization

Using specifically labelled compounds we have made a detailed study of the source of the hydrogen transferred in the elimination of C₃H₆ from the molecular ion of phenyln-propyl ether following electron impact ionization and from the protonated (and ethylated) molecule following chemical ionization. The migrating hydrogen originates from all three positions of the npropyl group but not in the ratio expected for randomization of the alkyl hydrogens prior to transfer. The source of the migrating hydrogen is similar for both electron impact ionization and chemical ionization, indicating that the factors governing the rearrangement are the same for both modes of ionization. From a comparison of the results for labelled 2,6-dimethyl phenyl n-propyl ethers with the results for the unsubstituted ether it is concluded that hydrogen transfer occurs only to the ether oxygen and not to the phenyl ring. A two-step mechanism involving a set of competing reversible hydrogen transfer reactions followed by C? O bond cleavage is proposed to explain the results.     

Enthalpic relaxation of convective desiccated trehalose-water glasses

Minimizing molecular mobility for desiccation preservation of biologics close to ambient temperature using trehalose glasses require quantitative characterization of their enthalpic relaxation at various end water contents. Differential scanning calorimetry (DSC) was used to characterize three different water contents: 0%, 1.5% and 10% over a wide range of aging temperatures. Results showed the characteristic time (τ) varies both with the water content and the aging temperature. τ increased with lowered aging temperature but showed a non-monotonous relationship as a function of water content. Fragility of trehalose glasses was analyzed using thermophysical parameters obtained from relaxation studies. The study showed trehalose to be a fragile glass former at all water contents, with 0% water samples showing a relatively stronger glass. A compromise between molecular mobility and glass fragility led to an optimal water content close to 1.5% and an aging temperature close to room temperature. This would ensure a τ value of 9000 h, which corresponds to a storage period of a year.     

Kinetics of CO oxidation on high-concentration phases of atomic oxygen on Pt(111)

Temperature-programmed reaction spectroscopy (TPRS) and direct, isothermal reaction-rate measurements were employed to investigate the oxidation of CO on Pt(111) covered with high concentrations of atomic oxygen. The TPRS results show that oxygen atoms chemisorbed on Pt(111) at coverages just above 0.25 ML (monolayers) are reactive toward coadsorbed CO, producing CO(2) at about 295 K. The uptake of CO on Pt(111) is found to decrease with increasing oxygen coverage beyond 0.25 ML and becomes immeasurable at a surface temperature of 100 K when Pt(111) is partially covered with Pt oxide domains at oxygen coverages above 1.5 ML. The rate of CO oxidation measured as a function of CO beam exposure to the surface exhibits a nearly linear increase toward a maximum for initial oxygen coverages between 0.25 and 0.50 ML and constant surface temperatures between 300 and 500 K. At a fixed CO incident flux, the time required to reach the maximum reaction rate increases as the initial oxygen coverage is increased to 0.50 ML. A time lag prior to the reaction-rate maximum is also observed when Pt oxide domains are present on the surface, but the reaction rate increases more slowly with CO exposure and much longer time lags are observed, indicating that the oxide phase is less reactive toward CO than are chemisorbed oxygen atoms on Pt(111). On the partially oxidized surface, the CO exposure needed to reach the rate maximum increases significantly with increases in both the initial oxygen coverage and the surface temperature. A kinetic model is developed that reproduces the qualitative dependence of the CO oxidation rate on the atomic oxygen coverage and the surface temperature. The model assumes that CO chemisorption and reaction occur only on regions of the surface covered by chemisorbed oxygen atoms and describes the CO chemisorption probability as a decreasing function of the atomic oxygen coverage in the chemisorbed phase. The model also takes into account the migration of oxygen atoms from oxide domains to domains with chemisorbed oxygen atoms. According to the model, the reaction rate initially increases with the CO exposure because the rate of CO chemisorption is enhanced as the coverage of chemisorbed oxygen atoms decreases during reaction. Longer rate delays are predicted for the partially oxidized surface because oxygen migration from the oxide phase maintains high oxygen coverages in the coexisting chemisorbed oxygen phase that hinder CO chemisorption. It is shown that the time evolution of the CO oxidation rate is determined by the relative rates of CO chemisorption and oxygen migration, R(ad) and R(m), respectively, with an increase in the relative rate of oxygen migration acting to inhibit the reaction. We find that the time lag in the reaction rate increases nearly exponentially with the initial oxygen coverage [O](i) (tot) when [O](i) (tot) exceeds a critical value, which is defined as the coverage above which R(ad)R(m) is less than unity at fixed CO incident flux and surface temperature. These results demonstrate that the kinetics for CO oxidation on oxidized Pt(111) is governed by the sensitivity of CO binding and chemisorption on the atomic oxygen coverage and the distribution of surface oxygen phases.     

Synthesis and Crystal Structures of Two Novel Anionic Aluminophosphates: A One-Dimensional Chain, UT-7 ([Al(3)P(5)O(20)H](5-)[C(7)H(13)NH(3)(+)](5)), and a Layer Containing Two Cyclic Amines, UT-8 ([Al(3)P(4)O(16)](3-)[C(4)H(7)NH(3)(+)](2)[C(5)H(10)NH(2)(+)])

UT-7 and UT-8 (University of Toronto, structure numbers 7 and 8) are two novel aluminophosphate materials prepared under non-aqueous conditions. Their structures, extended in one and two dimensions, respectively, have been solved by single-crystal X-ray diffraction and characterized by a variety of methods including powder X-ray diffraction (PXRD), insitu high-temperature PXRD, thermogravimetric analysis (TGA), energy dispersive X-ray analysis (EDX), and scanning electron microscopy (SEM). UT-7 ([Al(3)P(5)O(20)H](5)(-)[C(7)H(13)NH(3)(+)](5), triclinic space group P&onemacr;, Z = 2, a = 10.118(3) ?, b = 15.691(4) ?, c = 18.117(3) ?, alpha = 72.91(2) degrees, beta = 85.18(2) degrees, gamma = 79.49(2) degrees ) is built of polymeric one-dimensional chain units, hydrogen-bonded into anionic layers that are charge-compensated by interlamellar cycloheptylammonium cations. UT-7 is isostructural to our previously discovered UT-3 chain structure, isolated in the analogous cyclopentylamine system. UT-8 ([Al(3)P(4)O(16)](3-)[C(4)H(7)NH(3)(+)](2)[C(5)H(10)NH(2)(+)], monoclinic space group P2(1), Z = 2, a = 8.993(4) ?, b = 14.884(8) ?, c = 9.799(9) ?, beta = 103.52(3) degrees ) is a two-dimensional net isostructural to several previously reported [Al(3)P(4)O(16)](3)(-) layers. The interlayer region of UT-8 is occupied by two different cyclic organic amine species, namely piperidinium and cyclobutylammonium. To our knowledge, this is the first report of the crystal structure of an aluminophosphate material containing cyclobutylammonium or a mixture of cyclic amines. Interestingly, UT-7 is observed to thermally transform in the solid state to an as yet unknown layered material that can be independently synthesized in a similar synthetic system. In the same way as UT-3 transforms to the UT-4 layered phase, we believe UT-7 transforms to a layered material by means of a chain to layer transformation.     

A two-directional synthesis of (+/-)-perhydrohistrionicotoxin

An entirely two-directional synthesis of (+/-)-perhydrohistrionicotoxin is presented, utilizing a tandem oxime formation/Michael addition/[3 + 2] cycloaddition as the key step. This approach also constitutes formal syntheses of (+/-)-histrionicotoxin and (+/-)-histrionicotoxin 235A.