Computational study of the force dependence of phosphoryl transfer during DNA synthesis by a high fidelity polymerase

High fidelity polymerases are efficient catalysts of phosphodiester bond formation during DNA replication or repair. We interpret molecular dynamics simulations of a polymerase bound to its substrate DNA and incoming nucleotide using a quasiharmonic model to study the effect of external forces applied to the bound DNA on the kinetics of phosphoryl transfer. The origin of the force dependence is shown to be an intriguing coupling between slow, delocalized polymerase-DNA modes and fast catalytic site motions. Using noncognate DNA substrates we show that the force dependence is context specific.     

Surface studies on bimetallic thiocyanate ligand based single crystals of MnHg(SCN)4, CdHg(SCN)4 and ZnCd(SCN)4

Bimetallic SCN ligand based single crystals of manganese mercury thiocyanate (MMTC), cadmium mercury thiocyanate (CMTC) and zinc cadmium thiocyanate (ZCTC) are grown by slow solvent evaporation technique. The growth mechanism and surface features are investigated by optical microscopic techniques such as scanning electron microscopy (SEM) and atomic force microscopy (AFM). The laser induced surface damage measurements were carried out using a Q-switched Nd:YAG laser at 1064 nm with laser beam of 1.0 Hz and pulse duration 25 ps. The laser damage threshold values of MMTC, CMTC and ZCTC are found to be 15.9, 22.9 and 19.7 GW/cm², respectively. The SEM analysis of MMTC reveals the formation of elongated dendrite growth pattern caused by the fluctuations of Mn and Hg metal ligands when thiocyanate (SCN) bridges them. The etching study indicates the occurrence of different types of etch pit patterns like terraced triangles, pillars, pyramids and rods. The AFM images confirm the formation of three major hillocks with cavities in MMTC. The measured roughness values for CMTC crystal are very much lower than that of MMTC.     

Theoretical studies on the structure,sensitivity, density,thermodynamic properties and detonation performance of dinitrobitriazoles

Azodinitro- and dinitroethylene-bridged bitriazoles are of interest in the contest of high explosives, and were found to have true local energy minima at the B3LYP/aug-cc-pVDZ level of theory. The optimised structures, vibrational frequencies and thermodynamic quantities for bitriazoles were obtained in the ground state. Kamlet–Jacobs equations were used to evaluate the performance of bitriazoles based on the predicted density and the calculated heat of explosion. Detonation properties (D = 8.12 to 9.23 km s^?1 and P = 28.0 to 39.83 GPa) of bitriazoles were found to be promising compared with those of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX, D = 8.75 km s^?1 and P = 34.7 GPa) and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX, D = 8.96 km s^?1 and P = 35.96 GPa). The fusion of azoles particularly appears to be a promising area for investigation, since it may lead to the desirable consequences of higher heat of explosion, higher density and thus improved detonation performance.     

Behavior of nonlinear fluid viscous dampers for control of shock vibrations

Fluid viscous dampers have been widely used for suppression of high velocity shocks. While linear fluid viscous dampers have been used for a long time, nonlinear fluid viscous dampers show considerable promise due to their superior energy dissipation characteristics and significant reduction in the damper force compared to a linear fluid viscous damper for the same peak displacement. This paper presents results from experimental study to characterize fluid viscous dampers when subjected to half-cycle sine shock excitation. The mathematical formulation and a numerical study to evaluate the relative performance of structures with fluid viscous dampers subjected to short-duration shock (impulse) loading are also discussed. The influence of damper nonlinearity (α) and the supplemental damping ratio (ξ_sd) on response has been investigated. The supplemental damping ratio of nonlinear fluid viscous dampers when subjected to shock excitation is found by equivalent linearization using the concept of equal energy dissipation. The paper also presents some design charts, which can be used for preliminary decisions on parameters of nonlinear dampers to be used in design.     

Synthesis,Characterization and Photocatalytic Activity of Ag+‐ and Sn2+‐Doped KTi0.5Te1.5O6

In this study, the photocatalytic dye degradation efficiency of KTi_0.5Te_1.5O₆ synthesized through solid‐state method was enhanced by cation (Ag⁺/Sn⁺²) doping at potassium site via ion exchange method. As prepared materials were characterized by XRD, SEM‐EDS, IR, TGA and UV–Vis Diffuse reflectance spectroscopic (DRS) techniques. All the compounds were crystallized in cubic lattice with space group. The bandgap energies of parent, Ag⁺‐ and Sn⁺²‐doped KTi_0.5Te_1.5O₆ materials obtained from DRS profiles were found to be 2.96, 2.55 and 2.40 eV, respectively. Photocatalytic efficiency of parent, Ag⁺‐ and Sn⁺²‐doped materials was evaluated against the degradation of methylene blue (MB) and methyl violet (MV) dyes under visible light irradiation. The Sn⁺²‐doped KTi_0.5Te_1.5O₆ showed higher activity toward the degradation of both MB and MV dyes and its higher activity is ascribed to the lower bandgap energy compared to the parent and Ag⁺‐doped KTi_0.5Te_1.5O₆. The mechanistic degradation pathway of methylene blue (MB) was studied in the presence of Sn²⁺‐doped KTi_0.5Te_1.5O₆. Quenching experiments were performed to know the participation of holes, super oxide and hydroxyl radicals in the dye degradation process. The stability and reusability of the catalysts were studied.     

Tactile devices to sense touch on a par with a human finger

Our sense of touch enables us to recognize texture and shape and to grasp objects. The challenge in making an electronic skin which can emulate touch for applications such as a humanoid robot or minimally invasive and remote surgery is both in mimicking the (passive) mechanical properties of the dermis and the characteristics of the sensing mechanism, especially the intrinsic digital nature of neurons. Significant progress has been made towards developing an electronic skin by using a variety of materials and physical concepts, but the challenge of emulating the sense of touch remains. Recently, a nanodevice was developed that has achieved the resolution to decipher touch on a par with the human finger; this resolution is over an order of magnitude improvement on previous devices with a sensing area larger than 1 cm(2). With its robust mechanical properties, this new system represents an important step towards the realization of artificial touch.     

Supramolecular complex of [60]fullerene-grafted polyelectrolyte and surfactant: mechanism and nanostructures

Water-soluble, pH-responsive mono- and di-[60]fullerene end-capped poly(acrylic acid)s (PAA-C60 and C60-PAA-C60) were synthesized using the atom transfer radical polymerization technique. Isothermal titration calorimetry, dynamic light scattering, UV-vis spectroscopy, and transmission electron microscopy were employed to study the supramolecular complexation between fullerene end-capped PAAs and nonionic surfactant, polyethylene glycol (9-10) tert-octylphenyl ether, also known as Triton X100 (TX100) at different pH values. At pH < 4, TX100 bound specifically to C60 domains driven by hydrophobic and pi-pi interactions between TX100 and fullerene molecules. The binding was exothermic, and the magnitude of the interaction decreased gradually with increasing pH. The amount of polymer-bound TX100 was proportional to the fullerene content, which was approximately 1.3 and approximately 2.5 mM for 5 mM (concentration of carboxylic groups) PAA-C60 and C60-PAA-C60, respectively. Morphological transformations resulting in the formation of polymer/surfactant complex (PSC) precipitates in the course of binding were observed for both polymers. The PSC of PAA-C60 possessed a dense spherical structure, whereas the PSC of C60-PAA-C60 possessed a lamellar stacking structure. The PSC precipitates resolubilized in excess amounts of TX100 to form stable aggregates.