DNA‐Surfactant Interactions. Compaction,Condensation, Decompaction and Phase Separation

Recent investigations of the interaction between DNA and alkyltrimethylammonium bromides of various chain lengths are reviewed. Several techniques have been used such as phase map determinations, fluorescence microscopy, and electron microscopy. Dissociation of the DNA‐surfactant complexes, by the addition of anionic surfactant, has received special attention. Precipitation maps for DNA‐cationic surfactant systems were evaluated by turbidimetry for different salt concentrations, temperatures and surfactant chain lengths. Single‐stranded DNA molecules precipitate at lower surfactant concentrations than double‐helix ones. It was also observed that these systems precipitate for very low concentrations of both DNA and surfactant, and that the extension of the two‐phase region increases for longer chain surfactants; these observations correlate well with fluorescence microscopy results, monitoring the system at a single molecule level. Dissociation of the DNA‐cationic surfactant complexes and a concomitant release of DNA was achieved by addition of anionic surfactants. The unfolding of DNA molecules, previously compacted with cationic surfactant, was shown to be strongly dependent on the anionic surfactant chain length; lower amounts of a longer chain surfactant were needed to release DNA into solution. On the other hand, no dependence on the hydrophobicity of the compacting agent was observed. The structures of the aggregates formed by the two surfactants, after the interaction with DNA, were imaged by cryogenic transmission electron microscopy. It is possible to predict the structure of the aggregates formed by the surfactants, like vesicles, from the phase behaviour of the mixed surfactant systems. The compaction of a medium size polyanion with shorter polycations was furthermore studied by means of Monte Carlo simulations. The polyanion chain suffers a sudden collapse as a function of the condensing agent concentration and of the number of charges on the molecules. Further increase of the concentration gives an increase of the degree of compaction. The compaction was found to be associated with the polycations promoting bridging between different sites of the polyanion. When the total charge of the polycations was lower than that of the polyanion, a significant translational motion of the compacting agent along the polyanion was observed, producing only a small‐degree of intrachain segregation. However, complete charge neutralization was not a prerequisite to achieve compacted forms.     

Edelfosine—A new antineoplastic drug based on a phospholipid-like structure: The Langmuir monolayer study

Edelfosine (1-O-octadecyl-2-O-methyl-rac-glycero-3-phosphocholine, Et-18-OCH₃), an anticancer drug based on a phospholipid-like structure, was spread and investigated at the aqueous solution/air interface by means of surface pressure–area (π–A) and electric surface potential–area (ΔV–A) isotherms in addition to Brewster angle microscopy (BAM). The influence of such factors as subphase temperature, ionic strength, speed of compression and number of molecules spread at the surface on the characteristics of the π–A isotherms was studied. Edelfosine was found to form stable Langmuir monolayers which are nearly not influenced by the experimental conditions. The relative reflectivity measurements proved that the thickness of monolayer in the vicinity of collapse is 2.4 nm, which corresponds to length of a vertically oriented molecule. Perpendicular orientation of edelfosine molecules just before the film collapse has been confirmed with the apparent dipole moment value, which attains the maximum value in this region.     

Cationic agents for DNA compaction

Fluorescence microscopy was used to investigate the conformational changes of individual T4 DNA molecules induced by different compacting agents, namely the cationic surfactants, cetyltrimethylammonium bromide (CTAB) and chloride (CTAC), iron(III), lysozyme, and protamine sulfate. A protocol for establishing size estimates is suggested to obtain reproducible results. Observations show that in the presence of lysozyme and protamine sulfate, DNA molecules exhibit a conformational change from an elongated coil structure to compact globules, usually interpreted as a first-order transition. The maximum degree of compaction that is attained when iron(III) or CTAB (CTAC) are used as compacting agents is considerably smaller, and intermediate structures (less elongated coils) are visible even for high concentrations of these agents. Dynamic light scattering experiments were carried out, for some of the systems, to assess the reliability of size estimates from fluorescence microscopy.     

Aggregation and gelation in hydroxypropylmethyl cellulose aqueous solutions

In this work we present an analysis of the thermal behavior of hydroxypropylmethyl cellulose aqueous solutions, from room temperature to higher temperatures, above gelation. We focus on significant aspects, essentially overlooked in previous work, such as the correlation between polymer hydrophobicity and rheological behavior, and the shear effect on thermal gelation. Micropolarity and aggregation of the polymer chains were monitored by both UV/vis and fluorescence spectroscopic techniques, along with polarized light microscopy. Gel formation upon heating was investigated using rheological experiments, with both large strain (rotational) tests at different shear rates and small strain (oscillatory) tests. The present observations allow us to compose a picture of the evolution of the system upon heating: firstly, polymer reptation increases due to thermal motion, which leads to a weaker network. Secondly, above 55 degrees C, the polymer chains become more hydrophobic and polymer clusters start to form. Finally, the number of physical crosslinks between polymer clusters and the respective lifetimes increase and a three-dimensional network is formed. This network is drastically affected if higher shear rates, at non-Newtonian regimes, are applied to the system.     

Characterization of polyplexes involving small RNA

The purpose of the present study is to provide a tool for an efficient design and synthesis of non-viral vectors for small RNA delivery. The effects of properties of the polycation, such as molecular weight, charge density and backbone structure, to polyplex structure and physicochemical behavior were systematically evaluated. The condensing agents, polyethylenimine (PEI), chitosan (CS) and poly(allylamine) (PAA) were added to sRNA molecules at different N/P ratio. The efficiency of encapsulation and protection of sRNA, as well as polyplex size, zeta potential and morphology were followed and compared. The results show that PEI/sRNA polyplexes display a small size and positive zeta potential. However, for low molecular weights, this polycation is unable to protect sRNA in the presence of a decompacting agent. With chitosan, sRNA is efficiently compacted at high N/P ratios. The CS/sRNA complexes display small sizes, ca. 200 nm, positive surface charge and also good stability. Finally, the PAA/sRNA polyplexes were found to be the smallest at low N/P ratios, displaying a good encapsulation efficiency and high stability. A rationale for the experimental observations is provided using Monte Carlo simulation for systems with polycations of different length and charge density. The simulations showed that there is an interplay between the size of polycation chains and its charge density that define the degree of condensation for sRNA.     

Synthesis of the Oligosaccharide Moieties of Musettamycin,Marcellomycin and Aclacinomycin A,Antitumor Antibiotics

Abstract

Condensation of benzyl 2,3,6-trideoxy-3-trifluoroacetamido-α-L-lyxo-hexopyranoside (5) with 4-O-acetyl-3-O-benzyl-2,6-dideoxy-α-L-lyxo-hexopyranosyl bromide (10) carried out under Koenigs-Knorr conditions gave 12. Total deprotection of 12 and N-dimethylation at C-3 led to 17 while selective removal of the 4-O-acetyl group led to 13, a synthetic intermediate for preparing 24 and 33. Condensation of 13 with di-O-acetyl-L-fucal (18) or 4-O-acetyl-L-amicetal (25) in the presence of N-iodosuccinimide followed by hydrogenolysis of the C-2-I bond gave 20 and 27 respectively. The trisaccharide 24 then was obtained from 20 by the same sequence of reactions used to convert 12 into 17. After deacetylation and oxidation, this set of reactions also transformed 27 into 33.     

Information Processing with Molecules—Quo Vadis?

Information processing at the molecular level is coming of age. Since the first molecular AND gate was proposed about 20 years ago, the molecular interpretation of binary logic has become vastly more sophisticated and complex. However, the field is also at a crossroads. While cleverly designed molecular building blocks are abundant, difficult questions remain. How can molecular components be flexibly assembled into larger circuits, and how can these components communicate with one another. The concept of all‐photonic switching with photochromic supermolecules has shown some interesting potential and is discussed in this review. Although the field of molecular logic was originally discussed mainly in terms of a technology that might compete with solid‐state computers, potential applications have expanded to include clever molecular systems and materials for drug delivery, sensing, probing, encoding, and diagnostics. These upcoming trends, which are herein illustrated by selected examples, deserve general attention.     

A performance study of a high-gain target for heavy-ion beam fusion

Summary Through numerical simulations, a target has been designed to produce, when irradiated with the appropriate heavy-ion beam, an energy gain close to 100. The thermofluid numerical studies for the dynamical behaviour of this target, made with the 1D code CLIFF and with the 2D code COBI-1, have shown some interesting features: the fusion fuel ignites almost contemporaneously and ignition occurs only for asymmetries in the beam intensity between pole and equator of less than 6%. Radiation losses play an important role when asymmetries are present. Actually, when radiation transfer is switched-off in the code, ignition has been observed even for asymmetries of 10%. The authors of this paper have agreed to not receive the proofs for correction.     

Design of a dual nanostructured lipid carrier formulation based on physicochemical,rheological, and mechanical properties

Journal of Nanoparticle Research - The synergy between nanostructured lipid carriers (NLC) and chemical penetration enhancers provides the basis for a promising strategy to effectively deliver...     

Economy: the absent centre of mathematics education

Social and political turns in mathematics education research have brought into the field postmodern theorisations that researchers have been using to dismantle traditional philosophies of mathematics, to posit mathematics in the sociocultural terrain, and to spell out the role mathematics has in school exclusion. Sociopolitical perspectives constitute a privileged field of research to address the influence of economy on mathematical achievement. However, instead of investigating the role of economy in students’ achievement, sociopolitical studies have been contributing to a disavowal of the economic dimension of school mathematics. This paper synthesises a set of investigations carried out by the author in the last 5 years endeavouring to posit mathematics education in the political and economic spectrum of our time. It takes advantage of the contemporary combination of Hegel’s dialectics, Lacanian psychoanalysis and Marx’s critique of political economy, carried out by Slavoj ?i?ek, to develop a critique of the way research within the so-called ‘sociopolitical turn’ deals with the issue of equity; and marks out the contours of mathematics education’s ideological belonging.