Tyrosine nitration site specificity identified by LC/MS in nitrite-modified collagen type IV

Non-enzymatic nitrite induced collagen cross-linking results in changes reminiscent of age-related damage and parallels the well-known model system, non-enzymatic glycation. We have recently observed that nitrite modification of basement membrane proteins can induce deleterious effects on overlying retinal pigment epithelial cells in studies relevant to age-related macular degeneration. The present work was undertaken in order to confirm 3-nitro-tyrosine (3-NT) as a product of the reaction and to identify the site specificity of nitration in collagen IV, a major component of basement membranes. Human collagen type IV was modified via incubation with 200 mM NaNO(2) (pH=7.38) for one week at 37(o)C. The modified protein was prepared in 2 different ways, including acid hydrolysis and trypsin digestion for site specificity determination. The samples were analyzed by LC/MS using a C(12) RP column. Site specificity was determined from tandem MS/MS data utilizing TurboSEQUEST software and the Swiss-Prot sequence database. 3-NT was detected in protein digests and acid hydrolysates of nitrite modified collagen IV. Positive identification with standard 3-NT was confirmed by identical R(t), lambda(max)=279 nm and 355 nm, and m/z=227. Analyses of tryptic digests identified four sites of tyrosine nitration, alpha1(IV)Y348, alpha1(IV)Y534, alpha2(IV)Y327, and alpha2(IV)Y1081. These sites are located in the triple-helical region of the protein and provide clues regarding potential sites for nitrite modification in collagen type IV.     

Selective CO2 adsorption in a flexible non-interpenetrated metal-organic framework

We have prepared a flexible metal-organic framework and demonstrated that when activated by supercritical CO(2) it has greater gas sorption capacities than that activated by the heat-evacuation method, and it selectively adsorbs CO(2) over N(2) at room temperature.     

Chiral separation of N-methyl-dl-aspartic acid in rat brain tissue as N-ethoxycarbonylated (S)-(+)-2-octyl ester derivatives by GC-MS

A selective and sensitive analytical method was developed for enantiomeric separation and determination of N‐methyl‐DL‐aspartic acid (NMA). The method involved the conversion of each enantiomer into N‐ethoxycarbonylated (S)‐(+)‐2‐octyl ester derivative for the direct separation by gas chromatography–mass spectrometry (GC‐MS). The diastereomeric derivatives showed characteristic mass spectral properties for analysis by selected ion monitoring mode (SIM) and enabling enantioseparation on an achiral capillary column. Two enantiomers were baseline separated, and the detection limits for N‐methyl‐L‐aspartic acid (NMLA) and N‐methyl‐D‐aspartic acid (NMDA) were 0.07 and 0.03 ng/g, respectively. When applied to rat brain tissues for absolute configuration of NMA, only NMDA was determined, while NMLA was monitored as lower than the limit of detection. Copyright © 2012 John Wiley & Sons, Ltd.     

Nonaqueous synthesis of TiO2 nanocrystals using TiF4 to engineer morphology, oxygen vacancy concentration, and photocatalytic activity

Control over faceting in nanocrystals (NCs) is pivotal for many applications, but most notably when investigating catalytic reactions which occur on the surfaces of nanostructures. Anatase titanium dioxide (TiO(2)) is one of the most studied photocatalysts, but the shape dependence of its activity has not yet been satisfactorily investigated and many questions still remain unanswered. We report the nonaqueous surfactant-assisted synthesis of highly uniform anatase TiO(2) NCs with tailorable morphology in the 10-100 nm size regime, prepared through a seeded growth technique. Introduction of titanium(IV) fluoride (TiF(4)) preferentially exposes the {001} facet of anatase through in situ release of hydrofluoric acid (HF), allowing for the formation of uniform anatase NCs based on the truncated tetragonal bipyramidal geometry. A method is described to engineer the percentage of {001} and {101} facets through the choice of cosurfactant and titanium precursor. X-ray diffraction studies are performed in conjunction with simulation to determine an average NC dimension which correlates with results obtained using electron microscopy. In addition to altering the particle shape, the introduction of TiF(4) into the synthesis results in TiO(2) NCs that are blue in color and display a broad visible/NIR absorbance which peaks in the infrared (λ(max) ≈ 3400 nm). The blue color results from oxygen vacancies formed in the presence of fluorine, as indicated by electron paramagnetic resonance (EPR) and X-ray photoelectron spectroscopy (XPS) studies. The surfactants on the surface of the NCs are removed through a simple ligand exchange procedure, allowing the shape dependence of photocatalytic hydrogen evolution to be studied using monodisperse TiO(2) NCs. Preliminary experiments on the photoreforming of methanol, employed as a model sacrificial agent, on platinized samples resulted in high volumes of evolved hydrogen (up to 2.1 mmol h(-1) g(-1)) under simulated solar illumination. Remarkably, the data suggest that, under our experimental conditions, the {101} facets of anatase are more active than the {001}.     

Point process diagnostics based on weighted second-order statistics and their asymptotic properties

A new approach for point process diagnostics is presented. The method is based on extending second-order statistics for point processes by weighting each point by the inverse of the conditional intensity function at the point’s location. The result is generalized versions of the spectral density, R/S statistic, correlation integral and K-function, which can be used to test the fit of a complex point process model with an arbitrary conditional intensity function, rather than a stationary Poisson model. Asymptotic properties of these generalized second-order statistics are derived, using an approach based on martingale theory.     

Analysis of unstable vortical structure in a propeller wake affected by a simulated hull wake

A two-frame PIV (particle image velocimetry) technique was used to investigate the flow characteristics of a complicated propeller wake influenced by a hull wake. As the propeller is significantly affected by the hull wake of a marine vessel, measurements of the propeller wake under the hull wake are certainly needed for more reliable validation of numerical predictions. Velocity field measurements were conducted in a cavitation tunnel with a simulated hull wake. Generally, the hull wake generated by the hull of a marine ship may cause different loading distributions on the propeller blade in both the upper and the lower propeller planes. The unstable propeller wake caused by the ship’s hull was interpreted in terms of turbulent kinetic energy (T _KE) to obtain useful information for flow modeling. The unstable or unsteady phenomenon in the upper propeller wake was identified by using the proper orthogonal decomposition (POD) method to characterize the coherent flow structure with turbulent kinetic energy. Strong unsteadiness appeared in the second and higher modes, largely affecting the downstream flow characteristics. The first eigenmode can be used to appropriately identify the tip vortex positions even in the unstable downstream region, which are helpful for establishing reliable wake modeling.     

A biogentic-type synthesis of dendrolasin

Dendrolasin¹ was synthesized from farnesol via biogenetic-type intermediates.     

Lithiated cyclopropanone ketals

The ketene acetal I reacted with dibromocarbene yielding the dibromocyclopropanone ketal II, which was reduced to the monobromide III by treatment with tri-n-butyltin hydride. Reaction of III with n-butyllithium at ?78°C yielded the lithiated cyclopropanone ketal IV, which yielded adducts with acetone, cyclohexanone, cyclohexenone, 3,3,3-trimethoxybutan-2-one, 2-butanone, and 3-pentanone.     

Multifunctionality and crystal dynamics of a highly stable, porous metal-organic framework [Zn4O(NTB)2

A porous metal-organic framework [Zn(4)O(NTB)(2)].3DEF.EtOH (1), in which (3,6)-connected nets are doubly interpenetrated to generate curved three-dimensional channels, has been prepared. Framework 1 exhibits high permanent porosity (Langmuir surface area, 1121 m(2)/g; pore volume, 0.51 cm(3)/cm(3)), high thermal stability (up to 430 degrees C), high hydrogen adsorption capacity (1.9 wt % at 77 K and 1 atm), selective organic guest binding ability (K(f)()( )(): MeOH > pyridine > benzene > dodecane), and guest-dependent blue luminescence (lambda(max) depending on guest identity). Most interestingly, the framework sustains single crystallinity even at 400 degrees C and 10(-)(5) Torr, and the framework components undergo reversible dynamics, mainly rotational motion, in response to removal and rebinding of the guest molecules.