Three-vector correlation in statistical reactions: the role of the triatomic parity

This article presents a methodology for the determination of the k-j-k' three-vector correlation assuming a statistical model for atom-diatom reactions; k and k' are the reagent-approach and product-recoil directions, respectively, and j is the rotational angular momentum of the reagent diatomic. Although the polarization of reagent angular momentum is in most cases negligible, conservation of the triatomic parity imposes a certain polarization for some combinations involving low reagent and product rotational states. Statistical and quantum-mechanical polarization-dependent differential cross sections were calculated for the barrierless D(+) + H(2)(v = 0,j) → HD(v' = 0,j') + H(+) reaction. The agreement between the two is in most cases excellent, confirming the statistical character of the reaction at low and moderate collision energies.     

Xe对NO(X)微分截面和非弹性散射中的碰撞诱导旋转准直

本文对NO(X)-Xe碰撞系统在碰撞能量为519 cm^-1,测量了完全?-双峰分解的微分截面和碰撞引起的旋转准直力矩. 同时结合初始量子态选择,使用六极杆的非均质电场,借助量子态分辨的测量,利用(1+1'')共振增强的多光子电离和速度离子成像. 结果显示,微分截面以及偏振相关的微分截面均显示与从头算势能面上进行的量子力学散射计算[J. K?os etal. J. Chem. Phys. 137, 014312 (2012)]一致. 通过与准经典轨迹、硬壳势能的量子力学散射以及运动近端模型的比较,评估了势能对所测微分截面和碰撞引起的旋转准直力矩的影响.     

Stereodynamics of the F + HD(v = 0, j = 1) reaction: direct vs. resonant mechanisms

The stereodynamics and mechanism of the F + HD(v = 0, j = 1) → HF (DF) + D (H) reactions have been thoroughly analysed at collision energies in the 0-160 meV range. Specifically, this study is focused on (i) the comparison between the stereodynamics of the collisions leading to HF and DF formation, and (ii) the stereodynamical fingerprints of the resonance that occurs at low collision energies in the HF channel and whose manifestation in the total cross section is greatly diminished for initial j > 0. While previous studies were limited to the analysis of integral cross sections (ICS), differential cross sections (DCS) and reaction probabilities, in the present work we have included the analysis of vectorial quantities such as the direction of the initial rotational angular momentum and internuclear axis, and their effect on reactivity. In particular, polarisation parameters (PP) and polarisation dependent differential cross sections (PDDCS), quantities that describe how the intrinsic HD rotational angular momentum and molecular axis polarisations contribute to reaction, are calculated and examined. The evolution of the PPs with the collision energy differs markedly between the two reaction channels. For the DF channel, the PP values are small and change very little in the energy range in which DF formation is appreciable. In contrast, rapid fluctuations in the magnitude and sign of the PPs are observed in the HF channel at low collision energies in and around the resonance. As the collision energy increases, direct (non-resonant) scattering prevails, and the various quantities are reasonably well accounted for by the QCT calculations, as in the case of the DF channel. The intrinsic directional information has been used to access the extent of control that can be achieved through polarisation of the HD molecule prior to collision. It was found that the same extrinsic preparation leads to very different outcomes on the HF channel DCS when the collision energy is close to the resonance. It is also shown that polarisation of the HD internuclear axis along the initial relative velocity enhances the effect of the resonance and allows its clear identification. Finally, the effect of different extrinsic preparations on the angle-velocity DCS is found to be strong, thus allowing considerable control of product angular distributions.     

Phosphorylation of RAF Kinase Dimers Drives Conformational Changes that Facilitate Transactivation

RAF kinases are key players in the MAPK signaling pathway and are important targets for personalized cancer therapy. RAF dimerization is part of the physiological activation mechanism, together with phosphorylation, and is known to convey resistance to RAF inhibitors. Herein, molecular dynamics simulations are used to show that phosphorylation of a key N‐terminal acidic (NtA) motif facilitates RAF dimerization by introducing several interprotomer salt bridges between the αC‐helix and charged residues upstream of the NtA motif. Additionally, we show that the R‐spine of RAF interacts with a conserved Trp residue in the vicinity of the NtA motif, connecting the active sites of two protomers and thereby modulating the cooperative interactions in the RAF dimer. Our findings provide a first structure‐based mechanism for the auto‐transactivation of RAF and could be generally applicable to other kinases, opening new pathways for overcoming dimerization‐related drug resistance.     

Communication: rate coefficients from quasiclassical trajectory calculations from the reverse reaction: The Mu + H2 reaction re-visited

In a previous paper [P. G. Jambrina et al., J. Chem. Phys. 135, 034310 (2011)] various calculations of the rate coefficient for the Mu + H(2) → MuH + H reaction were presented and compared to experiment. The widely used standard quasiclassical trajectory (QCT) method was shown to overestimate the rate coefficients by several orders of magnitude over the temperature range 200-1000 K. This was attributed to a major failure of that method to describe the correct threshold for the reaction owing to the large difference in zero-point energies (ZPE) of the reactant H(2) and product MuH (～0.32 eV). In this Communication we show that by performing standard QCT calculations for the reverse reaction and then applying detailed balance, the resulting rate coefficient is in very good agreement with the other computational results that respect the ZPE, (as well as with the experiment) but which are more demanding computationally.