Generation and enumeration of compact conformations on the two-dimensional triangular and three-dimensional fcc lattices

We enumerated all compact conformations within simple geometries on the two-dimensional (2D) triangular and three-dimensional (3D) face centered cubic (fcc) lattice. These compact conformations correspond mathematically to Hamiltonian paths and Hamiltonian circuits and are frequently used as simple models of proteins. The shapes that were studied for the 2D triangular lattice included mxn parallelograms, regular equilateral triangles, and various hexagons. On the 3D fcc lattice we generated conformations for a limited class of skewed parallelepipeds. Symmetries of the shape were exploited to reduce the number of conformations. We compared surface to volume ratios against protein length for compact conformations on the 3D cubic lattice and for a selected set of real proteins. We also show preliminary work in extending the transfer matrix method, previously developed by us for the 2D square and the 3D cubic lattices, to the 2D triangular lattice. The transfer matrix method offers a superior way of generating all conformations within a given geometry on a lattice by completely avoiding attrition and reducing this highly complicated geometrical problem to a simple algebraic problem of matrix multiplication.     

Synthesis and antimicrobial activity of some novel furyl and benzimidazole substituted benzyl ethers

In this study, a series of novel furyl and benzimidazole substituted benzyl ethers were synthesized and evaluated for antibacterial and antifungal activities against S. aureus, Methicillin resistant S. aureus (MRSA), E. coli, C. albicans and C. krusei. Compound 6f and 6h exhibited the most potent anti‐bacterial activity with lowest MIC values of 3.12 μg/mL against S aureus and MRSA, respectively.     

Conformation and dynamics of arylthiol self-assembled monolayers on Au(111)

We report a computational investigation of the conformation and the dynamics of self-assembled monolayers (SAMs) of a set of aromatic thiols arranged in the ( radical3 x radical3)-R30 degrees packing ratio on a Au(111) surface using molecular dynamics (MD) simulations. It was found that the molecular conformations were better defined for the arylthiol with two phenyl groups as compared to those with a single phenyl group and that the chemical structure of the head and tail groups had a considerable influence on the system geometry. In line with the density functional theory (DFT) calculations of small thiol molecules, we found for the SAMs that the face-centered cubic (fcc) site on the Au(111) surface was the most preferred, followed by the hexagonal close-packed (hcp) site, while the bridge position showed the characteristics of a local energy maximum. The dynamics of thiol head groups on these three Au sites was found to govern the overall dynamics of SAMs as measured by the mean square displacement. We also report that both the conformation and the dynamics on the studied time scale were driven by the SAM formation energy.     

Evaluation of oil content and fatty acid composition of five endemic Bupleurum species growing in the Central Anatolia region of Turkey

The fatty acid composition of five endemic Bupleurum (Apiaceae) species was analysed by GC technique for their nutritional value. The amount of oil content of the species varied from 3.77% to 7.03%. Twenty-one fatty acids were identified in the oils. The fatty acid composition of the studied species contained oleic, palmitic and linoleic acids as the major components. Oleic acid ranged from 8.81% to 68.30%, while the levels of palmitic acid were found to be between 12.47% and 47.85%. Bupleurum lycaonicum, Bupleurum sulphureum and Bupleurum heldreichii are very good sources of oleic acid. The remaining species were characterised as containing the highest level of palmitic acid. In this study, the total saturated fatty acids ranged between 15.02 and 65.20%, while total monounsaturated fatty acids were between 18.10 and 70.65%. The total polyunsaturated fatty acid accounted for 13.47-35.20% of the studied fatty acids. Therefore, we can conclude that Bupleurum oils have a significant nutritional value.     

Polarization-maintaining fiber-based optical low-coherence reflectometer for characterization and ranging of birefringence

We describe a polarization-maintaining fiber-based polarization-sensitive optical low-coherence reflectometer for measurement of depth-resolved birefringence. Unlike for other fiber-based polarization-sensitive optical low-coherence reflectometers, here the linear birefringence of a sample can be measured from data recorded in a single A scan. Simultaneous measurement of retardation and orientation of birefringent axes with mica wave plates is demonstrated. The measured retardation is insensitive to sample rotation in the plane perpendicular to ranging.     

Evaluation of pressure levels in pipelines due to solar heat gains

A detailed numerical model based on a lumped capacity analysis, is developed for assessing potential pressure increases in pipelines due to solar energy gains. Test computations for gasoline and water show that for operational conditions of no pipeline flow, pressures reach levels for which structural damage may occur.     

The comparison of laser surface designing and pigment printing methods for the product quality

Developing new designs by using the computer and transferring the designs that are obtained to textile surfaces will not only increase and facilitate the production in a more practical manner, but also help you create identical designs. This means serial manufacturing of the products at standard quality and increasing their added values. Moreover, creating textile designs using the laser will also contribute to the value of the product as far as the consumer is concerned because it will not cause any wearing off and deformation in the texture of the fabric unlike the other methods.In the system that has been designed, the laser beam at selected wavelength and intensity was directed onto a selected textile surface and a computer-controlled laser beam source was used to change the colour substances on the textile surface.Pigment printing is also used for designing in textile and apparel sector. In this method, designs are transferred to the fabric manually by using dyestuff.In this study, the denim fabric used for the surfacing trial was 100% cotton, with a weft count per centimeter of 20 and a warp count per centimeter of 27, with fabric weight of 458 g/m².The first step was to prepare 40 pieces of denim samples, half of which were prepared manually pigment printing and the other half by using the laser beam. After this, some test applications were done. The tensile strength, tensile extension and some fastness values of designed pieces with two methods were compared according to the international standards.