A new synthesis of vitamin C

l-Arabinose was reduced to l-arabinitol and condensed with formaldehyde to give two bis(di-0-methylene-l-arabityloxymethane and two di-O-methylene-l-arabinitol derivatives. Cis-fused 1,3:2,4-Di-O-methylene-l-arabinitol and trans-fused 2,4:3,5-Di-O-methylene-l-arabinitol were also isolated; only the former was affected by the oxidation to give the corresponding aldehyde, which was converted successively to the hydroxy amide, the ethyl hydroxy ester, the corresponding keto ester and vitamin C.     

Synthesis, Crystal Structure and ab initio Studies of Cyclohexyl N-Phenylcarbamate

Abstract  

Cyclohexyl N-phenylcarbamate, C₁₃H₁₇NO₂ (I), which is a useful target for biotransformations by fungi, has been synthesized and the structure has been solved by X-ray diffraction. The crystals are triclinic, space group P [`1] bar{1} , with a = 5.2581 (2) ?, b = 9.5080 (3) ?, c = 12.6165 (4) ?, α = 70.544 (2)°, β = 89.075 (2)°, γ = 80.447 (2)°, M _r = 219.28, V = 585.96 (3) ?³, Z = 2 and R = 0.065. In the title compound the phenyl ring makes a dihedral angle of 30.68(7)° with the carbamate group The molecules are linked into infinite chains via N–H···O hydrogen bonds along the a axis. These hydrogen-bonded chains are further linked by weaker C–H···π interactions. Quantum-mechanical ab initio calculations for the free molecule reproduce well the observed bond lengths and valency angles but show that the crystal packing might be responsible for the rotation of the phenyl ring out of the carbamate plane in the solid state conformation.     

Calix[4]azacrowns as ionophores for liquid?Cliquid extraction and facilitated transport of biological supramolecular complexes

The native and methyl ester amino acids have been extracted by calix[4]azacrowns 1 (1,3-[ethylene-bis-aminocarbonylmethoxy)]-p-tert-butylcalix[4]arene) and 2 (1,3-[propylene-bis-aminocarbonylmethoxy)]-p-tert-butyl-calix[4]arene) from an aqueous phase into a chloroform phase and transported through a chloroform liquid membrane as ion pairs in the presence of picrate or tropaeolin 00 as counter ions aiming their separation. The amino acids under study exhibited good extractability by calix[4]azacrowns 1 and 2. Both receptors 1 and 2 showed good extractability towards amino acids under study. The results are discussed in term of correlation of structural properties of amino acids and calix[4]azacrowns involved in experiments. In this respect, the influence of chain length of receptors upon extraction and transport of amino acids, and the nature of anions used as counter ions are evaluated.     

Fingerprint chemotaxonomic GC–TOFMS profile of wood and bark of mangrove tree Sonneratia caseolaris (L.) Engl.

The bark and wood of Sonneratia caseolaris (L.) Engl. have been analyzed for chemical profile by GC–TOFMS. Overall thirty-two compounds from bark and twenty-eight compounds from wood have been detected. Sixteen constituents have been found to be common in both the extracts. GC–TOFMS chemical profile may be a significant finger print chemotaxonomic marker as an identity of this plant.     

Cross-link network of polydimethylsiloxane via addition and condensation (RTV) mechanisms. Part I: Synthesis and thermal properties

A series of highly cross-linked polysiloxane was synthesised via hydrosilylation and condensation reaction. Structural identification using Fourier Transform Infrared (FTIR) and ¹H-NMR confirmed their chemical structures. Their thermal and, mechanical properties, and crystallinity, were analysed and related to the level of cross-link density. These systems displayed elevated thermal and hardness properties at an increased cross-link density. Furthermore, the level of crystallinity was reduced as displayed by XRD analysis. Along with this observation, the calculated fractional free volume (FFV) showed a decreasing trend leading to the ‘densification’ effect. It was envisaged that the linear polysiloxane chain segments aligned parallel to each other in a triclinic crystal system to generate a crystalline domain. The spacing between these stacking chains was found to be about 7.2 Å as measured from simulated XRD pattern.     

Transformation of Acetaminophen by Dichromate Oxidation Produces the Toxicants 1,4-Benzoquinone and Ammonium Ions

The reaction of the common pain reliever acetaminophen (paracetamol, 4-acetamidophenol) with dichromate was investigated over time under conditions that simulate wastewater disinfection. The occurrence of the acetaminophen in the water bodies, especially in drinking water resources, has received considerable attentions. In situ chemical oxidation is a promising cost-effective treatment method to remove acetaminophen from water body as it degrades the drug to large extent. Experimental results indicate that the reaction is second order overall and first order with respect to both dichromate and acetaminophen, and has activation energy of 14.1 kJ/mol. The second-order rate constant ranges from 1.56 × 10^?3 to 13.4 × 10^?3 min^?1 at temperature from 35 to 65°C. The acetaminophen degradation rates can be accelerated through increasing reaction temperature and oxidant concentration. The reaction under acid conditions was slightly faster than under alkaline or neutral conditions. Two of the products were unequivocally identified as the toxic compounds 1,4-benzoquinone and ammonium ions. These results demonstrate that acetaminophen is likely to be transformed significantly into toxic product if dichromate is used as an oxidizing agent during wastewater treatment.     

Chemical Profile,Antioxidant Properties and Antimicrobial Activities of Malaysian Heterotrigona itama Bee Bread

The aim of the study was to determine the chemical profile, antioxidant properties and antimicrobial activities of Heterotrigona itama bee bread from Malaysia. The pH, presence of phytochemicals, antioxidant properties, total phenolic content (TPC) and total flavonoid content (TFC), as well as antimicrobial activities, were assessed. Results revealed a decrease in the pH of bee bread water extract (BBW) relative to bee bread ethanolic extract (BBE) and bee bread hot water extract (BBH). Further, alkaloids, flavonoids, phenols, tannins, saponins, terpenoids, resins, glycosides and xanthoproteins were detected in BBW, BBH and BBE. Also, significant decreases in TPC, TFC, DPPH activity and FRAP were detected in BBW relative to BBH and BBE. We detected phenolic acids such as gallic acid, caffeic acid, trans-ferulic acid, trans 3-hydroxycinnamic acid and 2-hydroxycinnamic acid, and flavonoids such as quercetin, kaempferol, apigenin and mangiferin in BBE using high-performance liquid chromatography analysis. The strongest antimicrobial activity was observed in Klebsilla pneumonia (MIC₅₀ 1.914 µg/mL), followed by E. coli (MIC₅₀ 1.923 µg/mL), Shigella (MIC₅₀ 1.813 µg/mL) and Salmonella typhi (MIC₅₀ 1.617 µg/mL). Bee bread samples possess antioxidant and antimicrobial properties. Bee bread contains phenolic acids and flavonoids, and could be beneficial in the management and treatment of metabolic diseases.     

Hit-to-Lead Short Peptides against Dengue Type 2 Envelope Protein: Computational and Experimental Investigations

Data from the World Health Organisation show that the global incidence of dengue infection has risen drastically, with an estimated 400 million cases of dengue infection occurring annually. Despite this worrying trend, there is still no therapeutic treatment available. Herein, we investigated short peptide fragments with a varying total number of amino acid residues (peptide fragments) from previously reported dengue virus type 2 (DENV2) peptide-based inhibitors, DN58wt (GDSYIIIGVEPGQLKENWFKKGSSIGQMF), DN58opt (TWWCFYFCRRHHPFWFFYRHN), DS36wt (LITVNPIVTEKDSPVNIEAE), and DS36opt (RHWEQFYFRRRERKFWLFFW), aided by in silico approaches: peptide–protein molecular docking and 100 ns of molecular dynamics (MD) simulation via molecular mechanics using Poisson–Boltzmann surface area (MMPBSA) and molecular mechanics generalised Born surface area (MMGBSA) methods. A library of 11,699 peptide fragments was generated, subjected to in silico calculation, and the candidates with the excellent binding affinity and shown to be stable in the DI-DIII binding pocket of DENV2 envelope (E) protein were determined. Selected peptides were synthesised using conventional Fmoc solid-phase peptide chemistry, purified by RP-HPLC, and characterised using LCMS. In vitro studies followed, to test for the peptides’ toxicity and efficacy in inhibiting the DENV2 growth cycle. Our studies identified the electrostatic interaction (from free energy calculation) to be the driving stabilising force for the E protein–peptide interactions. Five key E protein residues were also identified that had the most interactions with the peptides: (polar) LYS36, ASN37, and ARG350, and (nonpolar) LEU351 and VAL354; these residues might play crucial roles in the effective binding interactions. One of the peptide fragments, DN58opt_8-13 (PFWFFYRH), showed the best inhibitory activity, at about 63% DENV2 plague reduction, compared with no treatment. This correlates well with the in silico studies in which the peptide possessed the lowest binding energy (−9.0 kcal/mol) and was maintained steadily within the binding pocket of DENV2 E protein during the MD simulations. This study demonstrates the use of computational studies to expand research on lead optimisation of antiviral peptides, thus explaining the inhibitory potential of the designed peptides.     

Microbial Degradation,Spectral analysis and Toxicological Assessment of Malachite Green Dye by Streptomyces exfoliatus

Malachite green (MG) dye is a common environmental pollutant that threatens human health and the integrity of the Earth’s ecosystem. The aim of this study was to investigate the potential biodegradation of MG dye by actinomycetes species isolated from planted soil near an industrial water effluent in Cairo, Egypt. The Streptomyces isolate St 45 was selected according to its high efficiency for laccase production. It was identified as S. exfoliatus based on phenotype and 16S rRNA molecular analysis and was deposited in the NCBI GenBank with the gene accession number {"type":"entrez-nucleotide","attrs":{"text":"OL720220","term_id":"2159919206","term_text":"OL720220"}}OL720220. Its growth kinetics were studied during an incubation time of 144 h, during which the growth rate was 0.4232 (µ/h), the duplication time (td) was 1.64 d, and multiplication rate (MR) was 0.61 h, with an MG decolorization value of 96% after 120 h of incubation at 25 °C. Eleven physical and nutritional factors (mannitol, frying oil waste, MgSO₄, NH₄NO₃, NH₄Cl, dye concentration, pH, agitation, temperature, inoculum size, and incubation time) were screened for significance in the biodegradation of MG by S. exfoliatus using PBD. Out of the eleven factors screened in PBD, five (dye concentration, frying oil waste, MgSO₄, inoculum size, and pH) were shown to be significant in the decolorization process. Central composite design (CCD) was applied to optimize the biodegradation of MG. Maximum decolorization was attained using the following optimal conditions: food oil waste, 7.5 mL/L; MgSO₄, 0.35 g/L; dye concentration, 0.04 g/L; pH, 4.0; and inoculum size, 12.5%. The products from the degradation of MG by S. exfoliatus were characterized using high-performance liquid chromatography (HPLC) and gas chromatography-mass spectrometry (GC-MS). The results revealed the presence of several compounds, including leuco-malachite green, di(tert-butyl)(2-phenylethoxy) silane, 1,3-benzenedicarboxylic acid, bis(2-ethylhexyl) ester, 1,4-benzenedicarboxylic acid, bis(2-ethylhexyl) ester, 1,2-benzenedicarboxylic acid, di-n-octyl phthalate, and 1,2-benzenedicarboxylic acid, dioctyl ester. Moreover, the phytotoxicity, microbial toxicity, and cytotoxicity tests confirmed that the byproducts of MG degradation were not toxic to plants, microbes, or human cells. The results of this work implicate S. exfoliatus as a novel strain for MG biodegradation in different environments.