Product and Mechanism of Gas‐phase Pyrolysis of 2‐arylidinehydrazinopyrimidines: Interesting Route to Condensed Heterocycles[1]

Gas‐phase pyrolysis of N‐arylidine‐N′‐pyrimidin‐2‐yl‐hydrazine derivatives 1a , 1b , 1c , 1d , 1e gave the corresponding arylnitriles 2a , 2b , 2c , 2d , 2e , 2‐aminopyrimidine 3 , 3‐phenyl‐1,2,4‐triazolo[4,3‐a]pyrimidines 4 , 2‐phenyl‐1,2,4‐triazolo[1,5‐a]pyrimidines 5 , 2,4,5‐triphenyl‐1H‐imidazole 6 , and 2,3‐diphenylquinoline 7 . The analyses of the reaction products are reported and used to elucidate the mechanism of the pyrolytic process.     

Modeling of absorption kinetics of poly(acrylamide) hydrogels crosslinked by EGDMA and PEGDMAs

In this study, acrylamide-based hydrogels are synthesized by free radical solution polymerization in aqueous solution using ethylene glycol dimethacrylate (EGDMA) and its derivative polyethylene glycol dimethacrylate (PEGDMA) with different molecular weights as crosslinkers in the solution medium. The Fourier transform infrared spectroscopy technique is used for the structural characterization of the hydrogels. Dynamic swelling tests are conducted on acrylamide-based hydrogels for the determination of the swelling characteristics with respect to different crosslinking concentrations at room temperature. The parameters of swelling kinetics and diffusion mechanisms of the hydrogels are calculated with the aid of the data obtained. Accordingly, PEGDMA and EGDMA absorption capacity is found to increase with increasing concentrations. The lowest and highest water absorption capacities in PEGDMA₈₁₀ and EGDMA crosslinked hydrogels are 22.73–48.39 and 10.15–16.02 g/g, respectively. Water intake of hydrogels crosslinked by EGDMA and PEGDMAs followed Fickian nature type diffusion except for PEGDM₈₁₀, which has a swelling exponent greater than 0.5 and so does not follow a Fickian type of diffusion. PEGDM₈₁₀ showed the fastest diffusion rate of between 5.87 × 10^?4 and 10.87 × 10^?4 cm² s^?1.     

Assessment of Lewis-Acidic Surface Sites Using Tetrahydrofuran as a Suitable and Smart Probe Molecule

Measuring the Lewis-acidic surface sites in catalysis is problematic when the material‘s surface area is very low (S_BET ≤1 m² ⋅ g⁻¹). For the first time, a quantitative assessment of total acidic surface sites of very small surface area catalysts (MoO₃ as pure and mixed with 5–30 % CdO (wt/wt), as well as CdO for comparison) was performed using a smart new probe molecule, tetrahydrofuran (THF). The results were nearly identical compared to using another commonly used probe molecule, pyridine. This audition is based on the limited values of the surface area of these samples that likely require a relatively moderate basic molecule as THF with pK_b=16.08, rather than strong basic molecules such as NH₃ (pK_b=4.75) or pyridine (pK_b=8.77). We propose mechanisms for the interaction of vapour phase molecules of THF with the Lewis-cationic Mo and Cd atoms of these catalysts. Besides, dehydration of isopropyl alcohol was used as a probe reaction to investigate the catalytic activity of these catalysts to further support our findings in the case of THF in a temperature range of 175–300 °C. A good agreement between the obtained data of sample MoO₃-10 % CdO, which is characterised by the highest surface area value, the population of Lewis-acidic sites and % selectivity of propylene at all the applied reaction temperatures was found.     

A new and convenient synthesis of substituted benzobarrelenes

Bromination of 3-bromo-6,7-benzobicyclo [3.2.1] octa-2,6-diene at ?50°C gave anti-tribromo adduct (5) in essentially quantitative yield. The double dehydrobromination of (5) was achieved using potassium tert.- butoxide to give 2-bromo-benzobarrelene (7). Reaction of (7) with n-BuLi and subsequent quenching with CH₃I, CO₂, and dimethylformamide afforded the corresponding substituted benzobarrelenes in high yield.     

Structural Insights and Docking Analysis of Adamantane-Linked 1,2,4-Triazole Derivatives as Potential 11β-HSD1 Inhibitors

The solid-state structural analysis and docking studies of three adamantane-linked 1,2,4-triazole derivatives are presented. Crystal structure analyses revealed that compound 2 crystallizes in the triclinic P-1 space group, while compounds 1 and 3 crystallize in the same monoclinic P2₁/c space group. Since the only difference between them is the para substitution on the aryl group, the electronic nature of these NO₂ and halogen groups seems to have no influence over the formation of the solid. However, a probable correlation with the size of the groups is not discarded due to the similar intermolecular disposition between the NO₂/Cl substituted molecules. Despite the similarities, CE-B3LYP energy model calculations show that pairwise interaction energies vary between them, and therefore the total packing energy is affected. HOMO-LUMO calculated energies show that the NO₂ group influences the reactivity properties characterizing the molecule as soft and with the best disposition to accept electrons. Further, in silico studies predicted that the compounds might be able to inhibit the 11β-HSD1 enzyme, which is implicated in obesity and diabetes. Self- and cross-docking experiments revealed that a number of non-native 11β-HSD1 inhibitors were able to accurately dock within the 11β-HSD1 X-ray structure 4C7J. The molecular docking of the adamantane-linked 1,2,4-triazoles have similar predicted binding affinity scores compared to the 4C7J native ligand 4YQ. However, they were unable to form interactions with key active site residues. Based on these docking results, a series of potentially improved compounds were designed using computer aided drug design tools. The docking results of the new compounds showed similar predicted 11β-HSD1 binding affinity scores as well as interactions to a known potent 11β-HSD1 inhibitor.     

Molecular Docking and Dynamics Investigations for Identifying Potential Inhibitors of the 3-Chymotrypsin-like Protease of SARS-CoV-2: Repurposing of Approved Pyrimidonic Pharmaceuticals for COVID-19 Treatment

This study demonstrates the inhibitory effect of 42 pyrimidonic pharmaceuticals (PPs) on the 3-chymotrypsin-like protease of SARS-CoV-2 (3CL^pro) through molecular docking, molecular dynamics simulations, and free binding energies by means of molecular mechanics–Poisson Boltzmann surface area (MM-PBSA) and molecular mechanics–generalized Born surface area (MM-GBSA). Of these tested PPs, 11 drugs approved by the US Food and Drug Administration showed an excellent binding affinity to the catalytic residues of 3CL^pro of His41 and Cys145: uracil mustard, cytarabine, floxuridine, trifluridine, stavudine, lamivudine, zalcitabine, telbivudine, tipiracil, citicoline, and uridine triacetate. Their percentage of residues involved in binding at the active sites ranged from 56 to 100, and their binding affinities were in the range from −4.6 ± 0.14 to −7.0 ± 0.19 kcal/mol. The molecular dynamics as determined by a 200 ns simulation run of solvated docked complexes confirmed the stability of PP conformations that bound to the catalytic dyad and the active sites of 3CL^pro. The free energy of binding also demonstrates the stability of the PP–3CL^pro complexes. Citicoline and uridine triacetate showed free binding energies of −25.53 and −7.07 kcal/mol, respectively. Therefore, I recommend that they be repurposed for the fight against COVID-19, following proper experimental and clinical validation.     

Pharmacological properties of dicyanidoaurate(I)-based complexes: characterization and single crystal X-ray analysis

The synthesis of three bimetallic cyanido complexes with edbea [2,2′-(ethylenedioxy)bis(ethylamine)] ligand is reported. [Ni^II(μ-edbea)₂{Au(μ-CN)₂}₂]_n (1), [{Cu^II(edbea)}₂{Au(μ-CN)₂}₄]_n (2) and [Cd^II(edbea)₂][Au(CN)₂]₂·H₂O (3) were fully characterized by elemental, infrared, XRD (3), ESI-MS and thermal analysis. The DNA/BSA binding properties of these complexes were evaluated by spectrophotometric titration, fluorometric ethidium bromide kinetics, and DNA electrophoresis studies and their partially minor groove binding mode between the base pairs of DNA and electrostatic interaction between the amino acid residues of BSA were explained. The complexes were tested for their pharmacological properties. These molecules had excellent in vitro antiproliferative activity and also exhibited a strong tumor inhibiting effect against HT29, HeLa, C6 and Vero cell lines. These complexes had metastatic features as they are able to reduce cell migration activity and suppress tumor growth in vitro. Analysis of the DNA topoisomerase I relaxing activity indicates that the complexes do not inhibit topoisomerase I which regulates the topological states of the DNA double helix during DNA processing reactions. The TUNEL and DNA laddering assay results indicated that these compounds may destroy cell maintenance by triggering apoptosis. Immunohistochemistry staining analysis demonstrated that these complexes significantly decreased the expression of Bcl-2 in HeLa and HT29 cells while increasing the expression of P53 levels. Overall, the potent antiproliferative activity, low cytotoxic effect, good solubility, and micro molar range dosage observed for these complexes emphasizes their potential as anticancer drug candidates.     

Syntheses and modifications of bisdiazonium salts of 3,8-benzo[c]cinnoline and 3,8-benzo[c]cinnoline 5-oxide onto glassy carbon electrode and the characterization of the modified surfaces

The goal of this study was to prepare novel glassy carbon electrode surfaces using two similar bis-diazonium salts, 3,8-benzo[c]cinnoline (3,8-BCC-BDAS) and 3,8-benzo[c]cinnoline 5-oxide (3,8-BCCNO-BDAS) at the glassy carbon (GC) surface. These diazonium salts were reduced electrochemically and covalently electrografted onto the glassy carbon electrode surface to form modified electrodes. Electrochemical reduction of 3,8-BCC-BDAS and 3,8-BCCNO-BDAS salts on the electrode surface yielded a compact and stable film. The existence of BCC moieties on the GC surface was characterized by X-ray photoelectron spectroscopy, reflectance-adsorption infrared spectroscopy, cyclic voltammetry, ellipsometry, and electrochemical impedance spectroscopy. The stability and working potential range of the novel modified electrodes were also studied. The possibility of analytical application of these novel surfaces for inorganic cations and especially selectivity to copper ions was investigated. 3,8-diaminobenzo[c]cinnoline (3,8-DABCC) and its 5-oxide derivative (3,8-DABCCNO) were synthesized from the reductive cyclization of 2,2′-dinitrobenzidine and prepared their bisdiazonium salts via the tetrazotization reactions of the diamines with NaNO₂. The structures of 3,8-DABCC and 3,8-DABCCNO and their corresponding bisdiazonium salts are confirmed by spectral analysis.