Kinetic and mechanistic study on the thermal reactivity of stabilized phosphorus ylides,part 3: [(Acetyl)(arylcarbamoyl)methylene]triphenylphosphoranes and [(alkoxycarbonyl)(arylcarbamoyl)methylene]triphenylphosphoranes and their thiocarbamoyl analogues

A series of five [(acetyl)(arylcarbabmoyl)methylene]triphenyl‐phosphoranes 1a–e and their thiocarbamoyl analogues 2a–e , [(alkoxycarbonyl)(arylcarbamoyl)methylene]triphenylphosphoranes 3a–e and their thiocarbamoyl analogues 4a–e were prepared and fully characterized. All ylides are found under conditions of flash vacuum pyrolysis to fragment giving arylisocyanate or isothiocyanate and acetyl ylides or alkoxy ylides which undergo thermal extrusion of Ph₃PO. A kinetic study shows that these reactions are unimolecular and are of first‐order nature with no significant substituent effect. The thiocarbamoyl ylides 2 react from 4.6 to 42 times faster than their carbamoyl ylides 1 , while the thiocarbamoyl ylides 4 react from 6.6 to 20.9 times faster than their carbamoyl ylides 3 . © 2006 Wiley Periodicals, Inc. Int J Chem Kinet 39: 6–16, 2007     

Coordination networks with flexible ligands based on silver(I) salts: complexes of 1,3-bis(phenylthio)propane with silver(I) salts of PF6-, CF3COO-, CF3CF2COO-, CF3CF2)CF2COO-, p-TsO-, and CF3SO3-

The synthesis and characterization of nine coordination networks based on 1,3-bis(phenylthio)propane, L(3), and silver(I) salts of PF(6)(-) (1), CF(3)COO(-) (2), CF(3)CF(2)COO(-) (3), CF(3)CF(2)CF(2)COO(-) (4), p-TsO(-) (5, 6), and CF(3)SO(3)(-) (7-9) are reported. Only 1 and other "isostructural" complexes with weakly coordinating anions such as ClO(4)(-) and SbF(6)(-) are of the host-guest type. In all the other complexes, the anions and the acetone molecules, when present, are coordinated to the metal. Most of the complexes studied here form a 2D-coordination network. Only 4 and 5 adopt a polymer-like chain structure. The packing of the chains of 4 is pseudohexagonal compact, while that of 5 is of the centered type. In complex 1, the silver atom is tetrahedrally coordinated to the sulfur atoms of four different ligands. The PF(6)(-) anions and acetone molecules, sandwiched between silver-ligand cationic sheets, are held through van der Waals interactions. In each of the three perfluorocarboxylates (2-4), two silver atoms are joined by the anions in a diatomic bridging mode. The Ag...Ag distances are sufficiently short to indicate weak metal...metal interactions. The dimeric units in 2 and 3 are interconnected through the ligands, thereby generating a 2D-network of neutral sheets, while, in 4, the dimeric units are bound to four ligands and a 1D-coordination polymer is generated. In the case of the sulfonate anions (p-TsO(-) and CF(3)SO(3)(-)), the crystallization solvent influences the structure adopted. Thus, in 5, 7, and 9 obtained from petroleum ether, or other nonpolar solvents, two silver atoms are bound in a double-bridge fashion, while a monobridge mode is noted for 6 and 8, both recrystallized from diethyl ether. In 8, both bridging types are observed. The thermogravimetric investigation, in the room temperature-450 degrees C interval, of complexes 1, 3, and 7, which incorporate acetone molecules in their crystal structures, reveals a two-step weight loss for 1 (the acetone molecules are lost first followed by the ligands, leaving behind the silver salt), while complexes 3 and 7 decompose in a single step to metallic silver.     

The Behavior of 3,3-Diphenylindan-1,2-dione Towards Alkyl Phosphites

Summary. The reaction of 3,3-diphenylindan-1,2-dione with trimethyl phosphite in dry benzene at room temperature for about 15 h led to the formation of a mixture containing dimethyl (3,3-diphenyl-2-methoxy-1-indenyl)phosphate and dimethyl (3,3-diphenyl-1H-2-oxo-1-indanyl)phosphate, whereas with triisopropyl phosphite, diisopropyl (3,3-diphenyl-2-isopropoxy-1-indenyl)phosphate is the only product. Treatment of the dione with dialkyl phosphites under different experimental conditions gave dialkyl (3,3-diphenyl-1-hydroxy-2-oxo-1-indanyl)phosphates. Reaction mechanisms are presented which account for the experimental results. Structural assignments of the new compounds are based on the spectroscopic evidences and two examples were elucidated by X-ray crystallography.     

Conductometric studies of hexadecyltrimethylammonium bromide in aqueous solutions of ethanol and ethylene glycol

The effect of cosolvent on micellization of hexadecyltrimethyl ammonium bromide (CTAB) in aqueous solutions was studied. The conductivity of a mixture (cosolvent + water) as function of CTAB concentration was measured at different temperatures. Ethylene glycol and ethanol were used as a cosolvent. The conductivity data were used to determine the critical micelle concentration (CMC) and the effective degree of counterion dissociation of micelle in the temperature range 303.2 to 313.2 K. In all the cases studied, a linear relationship between log([CMC]_mix/mol dm⁻³) and the mass fraction of cosolvent in solvent mixture has been observed. The free energy (ΔG _mic ⁰ ), enthalpy (ΔH _mic ⁰ ), and entropy (ΔS _mic ⁰ ) of micellization were determined using the temperature dependence of CMC. The dependence of these thermodynamic parameters on solvent composition was determined. The standard free energy of micellization was found to be negative in all cases and becomes less negative as the cosolvent content increases. The enthalpy and entropy of micellization are independent of temperature in pure water, while ΔH _mic ⁰ and ΔS _mic ⁰ decrease dramatically with temperature in mixed cosolvents. Furthermore, the entropic contribution is larger than the enthalpic one in pure water, while in the mixed solvents, the enthalpic contribution predominates. The text was submitted by the authors in English.     

Determination of gold,palladium and copper by flame atomic absorption spectrometry after preconcentration on silica gel modified with 3-(2-aminoethylamino)propyl group

A preconcentration method of gold, palladium and copper based on the sorption of Au (III), Pd (II) and Cu (II) ions on a column packed with 3-(2-aminoethylamino)propyl bonded silica gel is described. The modified silica gel was synthesized and characterized by FT-IR and C, H, N elemental analysis. At column preconcentration, the effects of parameters such as pH, volume, flow rate, matrix constituents of solutions and type of eluent on preconcentration of gold, palladium and copper were studied. The recoveries of Au (III), Pd (II) and Cu (II) were 98.93±0.51, 98.81±0.36 and 99.21±0.42 % at 95 % confidence level, respectively. The detection limits (δ) of the elements were 0.032, 0.016 and 0.012 μg ml⁻¹, respectively. The preconcentration method was applied for determination of gold and palladium in certified reference material SARM 7B and copper in river and synthetic seawater by FAAS. Gold, palladium and copper were determined with relative error lower than 10 %.     

Structure of exo,exo-2,3-endo,endo-5,6-tetrabromobicycloheptane

The X-ray crystal structure analysis of the title compound, exo,exo-2,3-endo,endo-5,6-tetrabromobicycloheptane, C₇H₈Br₄, which is a product of high temperature bromination of norbornadiene, shows that the skeleton of the molecule is not changed after two bromine molecules are added via successive bromination reactions. The addition of Br₂ to both double bonds occurs (contrary to our expectation) in a syn fashion. It crystallizes in the orthorhombic space group Pbca with a = 15.688(2), b = 13.345(2), c = 9.461(1) Å, V = 1980.7(3) ų, Z = 8 and Dx = 2.762 gcm^–3.     

Brownian dynamics simulations of the reactions of hydrated electrons with components of DNAs and a DNA double-helix

As a first step toward developing simulation models for studying the indirect mechanism of radiation damage to DNAs, we have carried out Brownian dynamics simulations to study the reactions of hydrated electrons with a 12-base-pair B-DNA, (dA)₁₂(dT)₁₂, and with bases, monodeoxynucleotides, and polydeoxynucleotides. We first studied in detail the sensitivity of diffusion reaction rate constants to different model and simulation parameters. Based on the sensitivity studies, a set of model and simulation parameters was obtained for the final production runs. The use of this set of parameters reduced the computational costs but delivered reasonably reliable results. The calculated reaction rate constants were in qualitative agreement with experiments. For the DNA double-helix, (dA)₁₂(dT)₁₂, the simulations demonstrated that hydrated electrons preferred to attack the two ends of the double-helix. Electrostatic interactions between the DNA and the hydrated electrons make the T strand more susceptible to attack than the A strand. The increased reactivity of the T strand due to electrostatic interactions results from the increased reactivity of the C6 sites of the thymine bases, at the expense of the reactivity of the C8 sites of the adenine bases. The reactivity of the relatively buried reactive sites of the adenine and thymine bases are less affected by electrostatic interactions. © 1997 by John Wiley & Sons, Inc. J Comput Chem 18: 888–901, 1997     

Pyrolysis of β-hydroxyketones and α-ketoesters: Gas-phase elimination kinetics of 3-hydroxy-3-methyl-2-butanone and methyl benzoylformate

The rates of gas-phase elimination reactions of methyl benzoylformate ( 1 ) and 3-hydroxy-3-methyl-2-butanone ( 2 ) were obtained at T = 600 K. The two substrates undergo unimolecular first-order elimination for which the Arrhenius equations are, respectively, log k = 13.2 − 53270/(4.574 × 600) for ( 1 ) and log k = 12.4 − 53060/(4.574 × 600) for ( 2 ). The products of pyrolysis of ( 1 ) are benzaldehyde, formaldehyde and CO, while those of ( 2 ) are acetaldehyde and acetone. The kinetics of the elimination reactions show benzoylformic acid to be 10⁶-fold more reactive than ( 1 ), and pyruvic acid ca. 10⁵-fold more reactive relative to ( 2 ); an indication of the rate-controlling part played by the acidity of the hydrogen atom involved in the elimination process of the present compounds in this particular type of reaction. © 1997 John Wiley & Sons, Inc. Int J Chem Kinet 29: 295–298, 1997.     

Lysinibacillus Isolate MK212927: A Natural Producer of Allylamine Antifungal ‘Terbinafine’

Resistance to antifungal agents represents a major clinical challenge, leading to high morbidity and mortality rates, especially in immunocompromised patients. In this study, we screened soil bacterial isolates for the capability of producing metabolites with antifungal activities via the cross-streak and agar cup-plate methods. One isolate, coded S6, showed observable antifungal activity against Candida (C.) albicans ATCC 10231 and Aspergillus (A.) niger clinical isolate. This strain was identified using a combined approach of phenotypic and molecular techniques as Lysinibacillus sp. {"type":"entrez-nucleotide","attrs":{"text":"MK212927","term_id":"1520090447"}}MK212927. The purified metabolite displayed fungicidal activity, reserved its activity in a relatively wide range of temperatures (up to 60 °C) and pH values (6–7.8) and was stable in the presence of various enzymes and detergents. As compared to fluconazole, miconazole and Lamisil, the minimum inhibitory concentration of the metabolite that showed 90% inhibition of the growth (MIC₉₀) was equivalent to that of Lamisil, half of miconazole and one fourth of fluconazole. Using different spectroscopic techniques such as FTIR, UV spectroscopy, 1D NMR and 2D NMR techniques, the purified metabolite was identified as terbinafine, an allylamine antifungal agent. It is deemed necessary to note that this is the first report of terbinafine production by Lysinibacillus sp. {"type":"entrez-nucleotide","attrs":{"text":"MK212927","term_id":"1520090447"}}MK212927, a fast-growing microbial source, with relatively high yield and that is subject to potential optimization for industrial production capabilities.     

The Kynurenine Pathway and Kynurenine 3-Monooxygenase Inhibitors

Under normal physiological conditions, the kynurenine pathway (KP) plays a critical role in generating cellular energy and catabolizing tryptophan. Under inflammatory conditions, however, there is an upregulation of the KP enzymes, particularly kynurenine 3-monooxygenase (KMO). KMO has garnered much attention due to its production of toxic metabolites that have been implicated in many diseases and disorders. With many of these illnesses having an inadequate or modest treatment, there exists a need to develop KMO inhibitors that reduce the production of these toxic metabolites. Though prior efforts to find an appropriate KMO inhibitor were unpromising, the development of a KMO crystal structure has provided the opportunity for a rational structure-based design in the development of inhibitors. Therefore, the purpose of this review is to describe the kynurenine pathway, the kynurenine 3-monooxygenase enzyme, and KMO inhibitors and their potential candidacy for clinical use.