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101.
The N-dimensional Hamiltonian
102.
103.
Rimola A Aschi M Orlando R Ugliengo P 《Journal of the American Chemical Society》2012,134(26):10899-10910
Large-scale periodic quantum mechanical calculations (509 atoms, 7852 atomic orbitals) based on the hybrid B3LYP functional focused on the peptide folding induced by the adsorption on the (001) and (010) hydroxyapatite (HA) surfaces give interesting insights on the role of specific interactions between surface sites and the peptide, which stabilize the helix conformation over the "native" random coil ones for in silico designed model peptides. The two peptides were derived from the 12-Gly oligomer, with one (P1, C-tGGKGGGGGGEGGN-t) and two (P2, C-tGGKGGKEGGEGGN-t) glutamic acid (E) and lysine (K) residue mutations. The most stable gas-phase "native" conformation for both peptides resulted in a random coil (RC) structure, with the helix (H) conformation being ≈100 kJ mol(-1) higher in free energy. The two peptide conformations interact with the HA (001) and (010) surfaces by C═O groups via Ca(2+) ions, by hydrogen bond between NH(2) groups and the basic PO(4)(3-) groups and by a relevant fraction due to dispersion forces. Peptide adsorption was studied on the dry (001) surface, the wet one envisaging 2 H(2)O per surface Ca(2+) and, on the latter, also considering the adsorption of microsolvated peptides with 4 H(2)O molecules located at sites responsible of the interaction with the surface. The P1 mutant does prefer to be adsorbed as a random coil by ≈160 kJ/mol, whereas the reverse is computed for P2, preferring the helix conformation by ≈50 kJ/mol. Adsorption as helix of both P1 and P2 mutants brings about proton transfer toward the HA surfaces with a large charge transfer component to the interaction energy. 相似文献
104.
Rosabianca Trevisi Claudia Orlando Paolo Orlando Mario Amici Carla Simeoni 《Radiation measurements》2012,47(2):178-181
In Italy an extensive survey has been carried out with the aim to evaluate annual average radon concentration in underground workplaces.The survey covered 933 underground rooms located in 311 bank workplaces spread throughout in all Italian regions; at this scope the sampling was stratified random in order to be representative on national scale. The annual radon concentration was estimated by using passive radon dosemeters (NRPB/SSI type holder and CR-39 as detector): the devices were exposed for a period of about 3 months and 4 cycles were performed to cover a solar year. The radon levels in underground workplaces ranged from 27 to 4851 Bq/m3 with an overall mean value of 153 Bq/m3. As expected, radon distribution is not uniform throughout Italy: in several regions high radon annual averages have been found, confirming previous surveys.The analysis of data shows a high variability among regions and intra-region but low spread among rooms belonging to the same workplace.About 5% of underground workplaces displayed radon concentration exceeding 400 Bq/m3, and the 4.4% exceeds 500 Bq/m3, the national action level for the exposure to natural radioactivity in workplaces. 相似文献
105.
García-Flores AF Moreira AF Kaneko UF Ardito FM Terashita H Orlando MT Gopalakrishnan J Ramesha K Granado E 《Physical review letters》2012,108(17):177202
A remarkable hardening (~30 cm(-1)) of the normal mode of vibration associated with the symmetric stretching of the oxygen octahedra for the Ba(2)FeReO(6) and Sr(2)CrReO(6) double perovskites is observed below the corresponding magnetic ordering temperatures. The very large magnitude of this effect and its absence for the antisymmetric stretching mode provide evidence against a conventional spin-phonon coupling mechanism. Our observations are consistent with a collective excitation formed by the combination of the vibrational mode with oscillations of Fe or Cr 3d and Re 5d occupations and spin magnitudes. 相似文献
106.
Gustavsson S Bylander J Yan F Forn-Díaz P Bolkhovsky V Braje D Fitch G Harrabi K Lennon D Miloshi J Murphy P Slattery R Spector S Turek B Weir T Welander PB Yoshihara F Cory DG Nakamura Y Orlando TP Oliver WD 《Physical review letters》2012,108(17):170503
We have investigated the driven dynamics of a superconducting flux qubit that is tunably coupled to a microwave resonator. We find that the qubit experiences an oscillating field mediated by off-resonant driving of the resonator, leading to strong modifications of the qubit Rabi frequency. This opens an additional noise channel, and we find that low-frequency noise in the coupling parameter causes a reduction of the coherence time during driven evolution. The noise can be mitigated with the rotary-echo pulse sequence, which, for driven systems, is analogous to the Hahn-echo sequence. 相似文献
107.
Lucarini S Bartolucci S Bedini A Gatti G Orlando P Piersanti G Spadoni G 《Organic & biomolecular chemistry》2012,10(2):305-313
An efficient and practical approach for the synthesis of all four stereoisomers of the MT(2) melatonin receptor ligand 4-phenyl-2-propionamidotetralin (4-P-PDOT), each in enantiomerically pure form (ee > 99.9%), was developed. The strategy involved an optical resolution procedure of the key precursor (±)-4-phenyl-2-tetralone with the unusual resolving agent (S)-mandelamide, through the formation of four dihydronaphtalene-spiro-oxazolidin-4-one diastereomers. Interestingly, NMR experimental observations in combination with geometric calculations, provided unambiguous configuration assignments of all stereocenters of the key spiro stereoisomers. Cleavage of each single spiro diastereomer under acidic conditions gave enantiopure (R)- or (S)-4-phenyl-2-tetralone, which were then converted to each 4-P-PDOT single enantiomer by using stereoselective reactions. 相似文献
108.
Carrillo CA Saloni D Lucia LA Hubbe MA Rojas OJ 《Journal of colloid and interface science》2012,381(1):171-179
A new approach based on microemulsions formulated with at least 85% water and minority components consisting of oil (limonene) and surfactant (anionic and nonionic) is demonstrated for the first time to be effective for flooding wood's complex capillary structure. The formulation of the microemulsion was based on phase behavior scans of Surfactant-Oil-Water systems (SOWs) and the construction of pseudo-ternary diagrams to localize thermodynamically stable one-phase emulsion systems with different composition, salinity and water-to-oil ratios. Wicking and fluid penetration isotherms followed different kinetic regimes and indicated enhanced performance relative to that of the base fluids (water, oil or surfactant solutions). The key properties of microemulsions to effectively penetrate the solid structure are discussed; microemulsion formulation and resultant viscosity are found to have a determining effect in the extent of fluid uptake. The solubilization of cell wall components is observed after microemulsion impregnation. Thus, the microemulsion can be tuned not only to effectively penetrate the void spaces but also to solubilize hydrophobic and hydrophilic components. The concept proposed in this research is expected to open opportunities in fluid sorption in fiber systems for biomass pretreatment, and delivery of hydrophilic or lipophilic moieties in porous, lignocellulosics. 相似文献
109.
Hasson AS Tyndall GS Orlando JJ Singh S Hernandez SQ Campbell S Ibarra Y 《The journal of physical chemistry. A》2012,116(24):6264-6281
An important chemical sink for organic peroxy radicals (RO(2)) in the troposphere is reaction with hydroperoxy radicals (HO(2)). Although this reaction is typically assumed to form hydroperoxides as the major products (R1a), acetyl peroxy radicals and acetonyl peroxy radicals have been shown to undergo other reactions (R1b) and (R1c) with substantial branching ratios: RO(2) + HO(2) → ROOH + O(2) (R1a), RO(2) + HO(2) → ROH + O(3) (R1b), RO(2) + HO(2) → RO + OH + O(2) (R1c). Theoretical work suggests that reactions (R1b) and (R1c) may be a general feature of acyl peroxy and α-carbonyl peroxy radicals. In this work, branching ratios for R1a-R1c were derived for six carbonyl-containing peroxy radicals: C(2)H(5)C(O)O(2), C(3)H(7)C(O)O(2), CH(3)C(O)CH(2)O(2), CH(3)C(O)CH(O(2))CH(3), CH(2)ClCH(O(2))C(O)CH(3), and CH(2)ClC(CH(3))(O(2))CHO. Branching ratios for reactions of Cl-atoms with butanal, butanone, methacrolein, and methyl vinyl ketone were also measured as a part of this work. Product yields were determined using a combination of long path Fourier transform infrared spectroscopy, high performance liquid chromatography with fluorescence detection, gas chromatography with flame ionization detection, and gas chromatography-mass spectrometry. The following branching ratios were determined: C(2)H(5)C(O)O(2), Y(R1a) = 0.35 ± 0.1, Y(R1b) = 0.25 ± 0.1, and Y(R1c) = 0.4 ± 0.1; C(3)H(7)C(O)O(2), Y(R1a) = 0.24 ± 0.15, Y(R1b) = 0.29 ± 0.1, and Y(R1c) = 0.47 ± 0.15; CH(3)C(O)CH(2)O(2), Y(R1a) = 0.75 ± 0.13, Y(R1b) = 0, and Y(R1c) = 0.25 ± 0.13; CH(3)C(O)CH(O(2))CH(3), Y(R1a) = 0.42 ± 0.1, Y(R1b) = 0, and Y(R1c) = 0.58 ± 0.1; CH(2)ClC(CH(3))(O(2))CHO, Y(R1a) = 0.2 ± 0.2, Y(R1b) = 0, and Y(R1c) = 0.8 ± 0.2; and CH(2)ClCH(O(2))C(O)CH(3), Y(R1a) = 0.2 ± 0.1, Y(R1b) = 0, and Y(R1c) = 0.8 ± 0.2. The results give insights into possible mechanisms for cycling of OH radicals in the atmosphere. 相似文献
110.
Orlando Avila-Pozos Gennady Mishuris Alexander Movchan 《Continuum Mechanics and Thermodynamics》2010,22(6-8):545-553
A bi-material waveguide is assumed to have an array of sufficiently long cracks parallel to the boundaries. The Bloch–Floquet waves propagating along such a waveguide are dispersive, and the band gaps are clearly identified. Slow waves are supported by a system of long cracks, and such modes are represented by the flat dispersion surfaces. Asymptotic analysis combines a lower-dimensional approximation together with the boundary layers occurring near the crack tips. Stress intensity factors are evaluated via the boundary layer analysis, which is matched with the outer fields corresponding to the lower-dimensional model. Evolution of such an elastic system is discussed as the cracks grow as a consequence of the stress concentration, which occurs for some slow waves leading to the crack opening. The asymptotic analysis is supplied with numerical simulations and physical examples. 相似文献