NMR studies of the dynamics of a bifunctional rhodamine probe attached to troponin C

Fluorescence polarization measurements of bifunctional rhodamine (BR) probes provide a powerful approach to determine the in situ orientation of proteins within ordered complexes such as muscle fibers. For accurate interpretation of fluorescence measurements, it is important to understand the probe dynamics relative to the protein to which it is attached. We previously determined the structure of the N-domain of chicken skeletal troponin C, BR-labeled on the C helix, in complex with the switch region of troponin I, and demonstrated that the probe does not perturb the structure or dynamics of the protein. In this study, the motion of the fluorescence label relative to the protein has been characterized using NMR relaxation measurements of 13C-labeled methyl groups on the BR probe and 15N-labeled backbone amides of the protein. Probe dynamics were monitored using off-resonance 13C-R(1rho), 13C-R(1) and {1H}-13C NOE at magnetic field strengths of 500, 600, and 800 MHz. Relaxation data were interpreted in terms of the overall rotational correlation time of the protein and a two-time scale model for internal motion of the BR methyl groups, using a numerical optimization with Monte Carlo parameter error estimation. The analysis yields a 1.5 +/- 0.4 ps correlation time for rotation around the three-fold methyl symmetry axis, and a 0.8 +/- 0.4 ns rotational correlation time for reorientation of the 13C-14N bond with an associated S2s of 0.79 +/- 0.03. Order parameters of the backbone NH vectors in the helix to which the probe is attached average S2 approximately 0.85, implying that the amplitude of independent reorientation of the BR probe is small in magnitude, consistent with results from fluorescence polarization measurements in reconstituted muscle fibers.     

Coordination complexes exhibiting anion...pi interactions: synthesis, structure, and theoretical studies

The polydentate ligand 2,4,6-tris(dipyridin-2-ylamino)-1,3,5-triazine (dpyatriz) in combination with the Cu(ClO 4) 2/CuX 2 salt mixtures (X (-) = Cl (-), Br (-), or N 3 (-)) leads to the formation of molecular coordination aggregates with formulas [Cu 3Cl 3(dpyatriz) 2](ClO 4) 3 ( 2), [Cu 3Br 3(dpyatriz) 2](ClO 4) 3 ( 3), and [Cu 4(N 3) 4(dpyatriz) 2(DMF) 4(ClO 4) 2](ClO 4) 2 ( 4). These complexes consist of two dpyatriz ligands bridged via coordination to Cu (II) and disposed either face-to-face in an eclipsed manner ( 2 and 3) or parallel and mutually shifted in one direction. The copper ions complete their coordination positions with Cl (-) ( 2), Br (-) ( 3), or N 3 (-), ClO 4 (-), and N, N-dimethylformamide (DMF) ( 4) ligands. All complexes crystallize together with noncoordinate ClO 4 (-) groups that display anion...pi interactions with the triazine rings. These interactions have been studied by means of high level ab initio calculations and the MIPp partition scheme. These calculations have proven the ClO 4 (-)...[C 3N 3] interactions to be favorable and have revealed a synergistic effect from the combined occurrence of pi-pi stacking of triazine rings and the interaction of these moieties with perchlorate ions, as observed in the experimental systems.     

Copper-catalyzed oxidative sp3 C-H bond arylation with aryl boronic acids

An efficient method was developed for arylation of sp(3) C-H bonds using copper bromide as catalyst in absence of directing group with arylboronic acids. The oxidative arylation provides easy access to biologically active tetrahydroisoquinoline derivatives and can either use peroxide or molecular oxygen as oxidant.     

Urinary signature of anabolic steroids and glucocorticoids in humans by LC-MS

A metabonomic strategy based on LC-MS was employed to investigate the metabolic profile of urine samples from 20 athletes who had been tested positive for corticoids and anabolic steroids and 29 controls. In this aim, different sample preparations and chromatographic conditions were compared. The acquired LC-MS data of doped athletes and controls were subjected to analysis of variance (ANOVA) and principal component analysis (PCA). Using this approach, molecular signature of human urine was obtained showing that metabonomics could be a complementary tool to discriminate different urinary profiles and to track down metabolic changes in humans.     

Cooperative Metal Binding and Helical Folding in Model Peptides of Treble‐Clef Zinc Fingers

Synergy in zinc fingers : The comparison between peptide folding and metal binding properties of two model peptides of treble‐clef zinc fingers presenting high affinities for zinc and cobalt reveals a cooperative effect: the metal folds the peptide into a α‐helix, which in turn strengthens the metal core.

     

Flexibility of solid-phase microextraction for passive sampling of atmospheric pesticides

For low volatile pesticides, the applications of solid-phase microextraction (SPME) as an air sampler were reported with sampling time chosen in the linear stage of the sorption kinetics because of long equilibrium time. In these pre-equilibrium conditions, sampling rates (SRs) expressed as the volume of air sampled by the SPME sampler per unit of time, were used to estimate analytes concentrations in air. In the present study, to achieve good extraction performance and accurate calibration, the sorption kinetics of several pesticides with SPME were investigated in detail, with a focus on parameters influencing SRs. Linear air velocity was found to be the main parameter affecting SRs. For exposed fibers, with air velocities below 20–25 cm s⁻¹, SRs increased with increasing air velocity. When linear air velocity was equal to or greater than 25–30 cm s⁻¹, it had little effect on SRs. To improve the flexibility of SPME, different configurations of SPME were compared, i.e. different lengths of fibers exposed, retracted fibers, exposed fibers with grids. SRs were linearly proportional to exposed lengths of fibers. Using grids, lower SRs and wider calibration time range were achieved. SRs for retracted fibers were the lowest among the different experimented configurations. The accuracy of calibration was improved and more flexibility of SPME was provided.     

Tunability of the optical properties in the Y6(W,Mo)(O,N)12 system

New fluorite-type solid solution domains have been evidenced in the system Y₆(W,Mo)(O,N)₁₂ using precursors prepared by the amorphous citrate route. The oxynitrides as well as the low temperature oxides (600 °C) crystallize in a cubic-type symmetry while the oxides annealed above 1200 °C exhibit a rhombohedral symmetry. Either cationic (W/Mo) or anionic (O/N) substitutions bring the possibility to tune the optical absorption of the yttrium tungstate Y₆WO₁₂, which potential as inorganic UV absorbers is discussed.     

Corallistin A,a second example of a free porphyrin from a living organism. Isolation from the demosponge Corallistes sp. of the coral see and inhibition of abnormal cells

It is shown that the demosponge Corallistes sp. (Tetractinomorpha, Lithistida, Corallistidae) collected in the Coral Sea, contains corallistin A ( 1 ), the second example, of a free porphyrin from a living organism. The compound proved to be active against the Kb cell line. In contrast with the geoporphyrins which do not bear any O-atom corallistin A ( 1 ) carries two carboxylic groups.     

On the use of relative deceleration values for the determination of magnesium by PIGE

By spiking the sample and analyte standard with a compound containing a common non-analyte element, to which a relative deceleration property for 5 MeV protons has been ascribed, relative deceleration values for these target materials could be obtained by PIGE. These values are used to correct for matrix effects in elemental analysis using PIGE techniques. Following this approach, the determination of magnesium in the reference standards BSC 308, Cr XXXI, SARM 8 and SARM 9 was investigated by measuring the yield of the 390 keV²⁵Mg p(2,1) and 585 keV²⁵Mg p(1,0) -rays. Lithium carbonate was employed as the non-analyte spike and magnesium oxide as the analyte comparator.     

[1,3]Oxazolo[3,2-b][1,2,4]triazoles: a versatile synthesis of a novel heterocycle

An efficient one-pot microwave approach for the synthesis of novel [1,3]oxazolo[3,2-b][1,2,4]triazoles is described.