Description of a biofluorescence optical particle counter

A bioaerosol fluorescence detection system is being constructed using an ellipsoid reflector-based optical particle counter. The flux measuring device is to size submicron marine spray aerosol particles smaller than 100 nm in diameter. It will simultaneously non-destructively excite and detect fluorescence from organic matter contained in the aerosol. Chlorophyll-a is the primary fluorophor target, used as a marker for detecting phytoplankton (or derivatives thereof) in the particles. Particles have been sized to 500 nm in diameter and fluorescence detection testing is underway. The device will aid the quantification and identification of this organic material contained in marine spray aerosols, providing improved inputs into climate models and air quality assessments.     

Low-energy dipole strength and the critical case of Ca

Recent theoretical work has not led to a consensus regarding the nature of the low-energy E1 strength in the ^40,44,48Ca isotopes, for which high-resolution (γ,γ^′)$(\gamma ,{\gamma }^{\prime })$ data exist. Here we revisit this problem using the first-order quasiparticle random-phase approximation (QRPA) and different interactions. First we examine all even Ca isotopes with N=14–40$N=14\text{–}40$. All isotopes are predicted to undergo dipole transitions at low energy, of large and comparable isoscalar strength but of varying E1 strength. Provided a moderate and uniform energetic shift is introduced to the results, QRPA with the Gogny D1S interaction is able to account for the (γ,γ^′)$(\gamma ,{\gamma }^{\prime })$ data, because, up to N=28$N=28$, it yields a rather pure isoscalar oscillation. A neutron-skin oscillation is anticipated for N?30$N?30$. This contradicts existing predictions that ^44,48Ca develop a neutron-skin mode. Which theoretical result is correct cannot be resolved conclusively using the available data. We propose that alpha-scattering, possibly followed by an electroexcitation experiment, could resolve the situation and thereby help to improve the different models aspiring to describe reliably the low-energy dipole strength of nuclei.     

Unwanted combustion enhancement by C6F12O fire suppressant

Several agents are under consideration to replace CF₃Br for use in suppressing fires in aircraft cargo bays. In a Federal Aviation Administration (FAA) performance test simulating the explosion of an aerosol can, however, the replacements, when added at sub-inerting concentrations, have all been found to create higher pressure rise than with no agent, hence failing the test. Thermodynamic equilibrium calculations as well as perfectly-stirred reactor (PSR) simulations with detailed reaction kinetics, are performed for one of these agents, C₆F₁₂O (Novec 1230), to understand the reasons for the unexpected enhanced combustion rather than suppression. The high pressure rise with added agent is shown to depend on the amount of agent, and can only occur if a large fraction of the available oxidizer in the chamber is consumed, corresponding to stoichiometric proportions of fuel, oxygen, and agent. A kinetic model for the reaction of C₆F₁₂O in hydrocarbon–air flames has been developed. Stirred-reactor simulations predict that at higher agent loadings, the inhibition effectiveness of C₆F₁₂O is relatively insensitive to the overall stoichiometry, and the marginal inhibitory effect of the agent is greatly reduced, so that the mixture remains flammable over a wide range of conditions corresponding to those of the FAA test. The present findings are consistent with and support the earlier analyses for C₂HF₅ and CF₃Br, which were also evaluated in the FAA test.     

VEGA: visual comparison of phylogenetic trees for evolutionary genome analysis (ChinaVis 2019)

In the field of evolutionary genome analysis, biologists seek to identify important genes or chromosome regions by comparing phylogenetic trees and analyzing the mutation at which locus might affect phenotypic traits. Unfortunately, the tree comparison and accompanying analysis are often performed manually. In this paper, we characterize the workflow of evolutionary genome analysis and present a task analysis for the fundamental questions asked by biologists during the analysis procedure. We propose two algorithms to enable quantitative tree comparison. One is to measure the differences between corresponding leaf nodes on two trees, and the other is to compute the classification inconsistency of each leaf node by comparing tree structure with a given biological classification. Configuring with the obtained difference and inconsistency, we present a visual analysis system, visual comparison of phylogenetic trees for evolutionary genome analysis, which not only enables biologists to intuitively explore trees but also identify locus which affects their traits by comparing SNP variants of selected leaf nodes. We conclude with case studies from two biologists who used our system to augment their previous manual analysis workflow and demonstrate that our system can reveal more insight.     

Electromagnetically induced transparency in cesium vapor with probe pulses on the single-photon level

We perform electromagnetically induced transparency (EIT) experiments in cesium vapor with pulses on the single-photon level for the first time. This was made possible by an extremely large total suppression of the EIT coupling beam by 118 dB mainly due to a newly developed triple-pass planar Fabry-Pérot etalon filter. Slowing and shaping of single-photon light pulses as well as the generation of pulses suitable for quantum key distribution applications and testing of approaches for single photon storage is demonstrated. Our results extend single-photon EIT to the particularly interesting wavelength of the Cs D1 line.     

Langmuir-Blodgett films of hydrophobins HFBI and HFBII

Hydrophobins are small fungal proteins, which have remarkable surface-chemical properties. They self-assemble at hydrophobic/hydrophilic interfaces and work as adhesive agents and coatings. Sixteen layer Langmuir-Blodgett films of hydrophobins HFBI and HFBII from the fungus Trichoderma reesei were prepared and studied using grazing-incidence X-ray diffraction and reflectivity techniques. Both kind of films contain hexagonally ordered crystallites on the substrate with unit cell parameters of a = b = 54 Å (HFBI) and a = b = 55 Å (HFBII). The structure is similar to the structure of monolayer Langmuir-Blodgett films.     

A fourth-order parabolic equation modeling epitaxial thin film growth

We study the continuum model for epitaxial thin film growth from Phys. D 132 (1999) 520-542, which is known to simulate experimentally observed dynamics very well. We show existence, uniqueness and regularity of solutions in an appropriate function space, and we characterize the existence of nontrivial equilibria in terms of the size of the underlying domain. In an investigation of asymptotical behavior, we give a weak assumption under which the ω-limit set of the dynamical system consists only of steady states. In the one-dimensional setting we can characterize the set of steady states and determine its unique asymptotically stable element. The article closes with some illustrative numerical examples.