Effect of gem-Difluorination on the Key Physicochemical Properties Relevant to Medicinal Chemistry: The Case of Functionalized Cycloalkanes

Physico-chemical properties important to drug discovery (pK_a, LogP, and aqueous solubility), as well as metabolic stability, were studied for a series of functionalized gem-difluorinated cycloalkanes and compared to those of non-fluorinated and acyclic counterparts to evaluate the impact of the fluorination. It was found that the influence of the CF₂ moiety on the acidity/basicity of the corresponding carboxylic acids and amines was defined by inductive the effect of the fluorine atoms and was nearly the same for acyclic and cyclic aliphatic compounds. Lipophilicity and aqueous solubility followed more complex trends and were affected by the position of the fluorine atoms, ring size, and even the nature of the functional group present; also, significant differences were found for the acyclic and cyclic series. Also, gem-difluorination either did not affect or slightly improved the metabolic stability of the corresponding model derivatives. The presented results can be used as a guide for rational drug design employing fluorine and establish the first chapter in a catalog of the key in vitro properties of fluorinated cycloalkanes.     

The Symbiotic Relationship Between Drug Discovery and Organic Chemistry

All pharmaceutical products contain organic molecules; the source may be a natural product or a fully synthetic molecule, or a combination of both. Thus, it follows that organic chemistry underpins both existing and upcoming pharmaceutical products. The reverse relationship has also affected organic synthesis, changing its landscape towards increasingly complex targets. This Review article sets out to give a concise appraisal of this symbiotic relationship between organic chemistry and drug discovery, along with a discussion of the design concepts and highlighting key milestones along the journey. In particular, criteria for a high-quality compound library design enabling efficient virtual navigation of chemical space, as well as rise and fall of concepts for its synthetic exploration (such as combinatorial chemistry; diversity-, biology-, lead-, or fragment-oriented syntheses; and DNA-encoded libraries) are critically surveyed.     

Ultraviolet spectroscopy of pyrene in a supersonic jet and in liquid helium droplets

In a series of experiments devoted to the study of polycyclic aromatic hydrocarbons for astrophysical applications, the S(2)<--S(0) transition of jet-cooled pyrene (C(16)H(10)) at 321 nm has been studied by an absorption technique for the first time. The spectra observed by cavity ring-down spectroscopy closely resemble the excitation spectra obtained earlier by laser-induced fluorescence (LIF) and show the same band clusters arising from the vibronic interaction of S(2) with S(1). We have also investigated pyrene when it was incorporated into 380 mK cold helium droplets. These spectra which were recorded employing LIF and molecular beam depletion spectroscopy are broadened and redshifted by 0.94 nm but retain the essential features of the gas phase spectra.     

Bifurcation to heteroclinic cycles and sensitivity in three and four coupled phase oscillators

We study the bifurcation and dynamical behaviour of the system of N globally coupled identical phase oscillators introduced by Hansel, Mato and Meunier, in the cases N=3 and N=4. This model has been found to exhibit robust ‘slow switching’ oscillations that are caused by the presence of robust heteroclinic attractors. This paper presents a bifurcation analysis of the system in an attempt to better understand the creation of such attractors. We consider bifurcations that occur in a system of identical oscillators on varying the parameters in the coupling function. These bifurcations preserve the permutation symmetry of the system. We then investigate the implications of these bifurcations for the sensitivity to detuning (i.e. the size of the smallest perturbations that give rise to loss of frequency locking).For N=3 we find three types of heteroclinic bifurcation that are codimension-one with symmetry. On varying two parameters in the coupling function we find three curves giving (a) an S₃-transcritical homoclinic bifurcation, (b) a saddle-node/heteroclinic bifurcation and (c) a Z₃-heteroclinic bifurcation. We also identify several global bifurcations with symmetry that organize the bifurcation diagram; these are codimension-two with symmetry.For N=4 oscillators we determine many (but not all) codimension-one bifurcations with symmetry, including those that lead to a robust heteroclinic cycle. A robust heteroclinic cycle is stable in an open region of parameter space and unstable in another open region. Furthermore, we verify that there is a subregion where the heteroclinic cycle is the only attractor of the system, while for other parts of the phase plane it can coexist with stable limit cycles. We finish with a discussion of bifurcations that appear for this coupling function and general N, as well as for more general coupling functions.     

Synthesis of enantiopure (R,R)- and (S,S)-cis-2,3-propanoprolines

A novel approach to the synthesis of an enantiopure bicyclic proline analogue, hexahydrocyclopenta[b]pyrrole-6a(1H)-carboxylic acid (‘2,3-propanoproline’), has been developed. The method relied on tandem Strecker-nucleophilic cyclization reaction of 2-(2-bromoethyl)cyclopentanone. The overall synthetic scheme included six steps and resulted in 18% overall yield of both enantiomers of the title amino acid.     

Solid-state synthesis of boron subnitride, B6N: myth or reality?

Solid-state synthesis of boron subnitride, B₆N, as a result of chemical interaction between boron and boron nitride at 7.5 GPa and 1700 °C has been previously reported by Hubert et al. However, a critical analysis of the results has shown that the evidence for the formation of boron subnitride with B₆O-like structure is inconclusive. We have studied in situ the interaction between boron and BN at the same p–T conditions using X-ray diffraction with synchrotron radiation. At 7.4 GPa and 1700 °C the formation of a new phase has not been observed. At the same time, HP–HT treatment has resulted in strong and unpredictable preferred orientation of boron crystallites. This leads to the rise of some weak boron reflections that might be erroneously attributed to the appearance of a new phase. To cite this article: V.L. Solozhenko et al., C. R. Chimie 9 (2006).     

Benzo[f]isoindole derivatives from cycloaddition reaction of 2,4-dimethylpyrimido[2,1-a]isoindole and maleimides

In contrast to the previously reported results in the reaction of maleimides with pyrido[2,1-a]isoindole and 1,2-bis substituted isoindoles, the reaction between 2,4-dimethylpyrimido[2,1-a]isoindole and maleimides leads to the formation of unusual products. Their structure is assessed by NMR and mass spectrometry. An original reaction pathway is proposed. The high quantum yields observed in fluorescence opens the route to applications as biological probes. To cite this article: Z.V. Voitenko et al., C. R. Chimie 9 (2006).     

New Kendomycin Derivative Isolated from Streptomyces sp. Cl 58-27

In the course of screening new streptomycete strains, the strain Streptomyces sp. Cl 58-27 caught our attention due to its interesting secondary metabolite production profile. Here, we report the isolation and characterization of an ansamycin natural product that belongs structurally to the already known kendomycins. The structure of the new kendomycin E was elucidated using NMR spectroscopy, and the corresponding biosynthetic gene cluster was identified by sequencing the genome of Streptomyces sp. Cl 58-27 and conducting a detailed analysis of secondary metabolism gene clusters using bioinformatic tools.