A membrane introduction flame ionization/electron capture detection (MIFID/ECD) system for the rapid, real-time screening of volatile disinfection byproducts and hydrocarbon contaminants in water

Described is a system that employs an online membrane introduction (MI) interface coupled with parallel flame ionization and electron capture detectors (FID/ECD). We report the use of a MIFID/ECD system as an online method to detect total volatile organic halides (ΣVOXs) and volatile organic compounds (ΣVOCs) as aggregate parameters in environmental water samples at sub parts-per-billion levels without the need for sample handling or analyte pre-concentration. The instrument provides rapid screening and real-time monitoring capabilities of important classes of water contaminants in a simple system without the vacuum requirements of MS detectors. Furthermore, the MIFID/ECD instrument was successfully employed as a real-time reaction monitor for the photodegradation of toluene by an advanced oxidation process and the formation of volatile disinfection byproducts in the chlorination of natural waters. The results of these experiments compare favorably to those obtained using membrane introduction mass spectrometry (MIMS).     

Towards liquid chromatography time-scale peptide sequencing and characterization of post-translational modifications in the negative-ion mode using electron detachment dissociation tandem mass spectrometry

Electron detachment dissociation (EDD) of peptide poly-anions is gentle towards post-translational modifications (PTMs) and produces predictable and interpretable fragment ion types (a., x ions). However, EDD is considered an inefficient fragmentation technique and has not yet been implemented in large-scale peptide characterization strategies. We successfully increased the EDD fragmentation efficiency (up to 9%), and demonstrate for the first time the utility of EDD-MS/MS in liquid chromatography time-scale experiments. Peptides and phosphopeptides were analyzed in both positive- and negative-ion mode using electron capture/transfer dissociation (ECD/ETD) and EDD in comparison. Using approximately 1 pmol of a BSA tryptic digest, LC-EDD-MS/MS sequenced 14 peptides (27% aa sequence coverage) and LC-ECD-MS/MS sequenced 19 peptides (39% aa sequence coverage). Seven peptides (18% aa sequence coverage) were sequenced by both EDD and ECD. The relative small overlap of identified BSA peptides demonstrates the complementarity of the two dissociation modes. Phosphopeptide mixtures from three trypsin-digested phosphoproteins were subjected to LC-EDD-MS/MS resulting in the identification of five phospho-peptides. Of those, one was not found in a previous study using a similar sample and LC-ETD-MS/MS in the positive-ion mode. In this study, the ECD fragmentation efficiency (15.7% av.) was superior to the EDD fragmentation efficiency (3.6% av.). However, given the increase in amino acid sequence coverage and extended PTM characterization the new regime of EDD in combination with other ion-electron fragmentation techniques in the positive-ion mode is a step towards a more comprehensive strategy of analysis in proteome research.     

Structure-based dissection of the natural product cyclopentapeptide chitinase inhibitor argifin

Chitinase inhibitors have chemotherapeutic potential as fungicides, pesticides, and antiasthmatics. Argifin, a natural product cyclopentapeptide, competitively inhibits family 18 chitinases in the nanomolar to micromolar range and shows extensive substrate mimicry. In an attempt to map the active fragments of this large natural product, the cyclopentapeptide was progressively dissected down to four linear peptides and dimethylguanylurea, synthesized using a combination of solution and solid phase peptide synthesis. The peptide fragments inhibit chitinase B1 from Aspergillus fumigatus (AfChiB1), the human chitotriosidase, and chitinase activity in lung homogenates from a murine model of chronic asthma, with potencies ranging from high nanomolar to high micromolar inhibition. X-ray crystallographic analysis of the chitinase-inhibitor complexes revealed that the conformations of the linear peptides were remarkably similar to that of the natural product. Strikingly, the dimethylguanylurea fragment, representing only a quarter of the natural product mass, was found to harbor all significant interactions with the protein and binds with unusually high efficiency. The data provide useful information that could lead to the generation of drug-like, natural product-based chitinase inhibitors.     

Amine functionalised metal organic frameworks (MOFs) as adsorbents for carbon dioxide

Three different porous metal organic framework (MOF) materials have been prepared with and without uncoordinated amine functionalities inside the pores. The materials have been characterized and tested as adsorbents for carbon dioxide. At 298 K the materials adsorb significant amount of carbon dioxide, the amine functionalised adsorbents having the highest CO₂ adsorption capacities, the best adsorbing around 14 wt% CO₂ at 1.0 atm CO₂ pressure. At 25 atm CO₂ pressure, up to 60 wt% CO₂ can be adsorbed. At high pressures the CO₂ uptake is mostly dependent on the available surface area and pore volume of the material in question. For one of the iso-structural MOF pairs the introduction of amine functionality increases the differential adsorption enthalpy (from isosteric method) from 30 to around 50 kJ/mole at low CO₂ pressures, while the adsorption enthalpies reach the same level at increase pressures. The high pressure experimental results indicate that MOF based solid adsorbents can have a potential for use in pressure swing adsorption of carbon dioxide at elevated pressures.     

Yoctomole analysis of ganglioside metabolism in PC12 cellular homogenates

We report an ultrasensitive method for the analysis of glycosphingolipid catabolism. The substrate G(M1) and the set of seven metabolites into which it can be degraded (G(A1), G(M2), G(A2), G(M3), LacCer, GlcCer, and Cer) were labeled with the highly fluorescent dye tetramethylrhodamine. CE with LIF detection was used to assay these compounds with 150 +/- 80 yoctomole mass (1 ymol = 10(-24) mol = 0.6 copies) detection limits and 5 +/- 3 pM concentration detection limits. An alignment algorithm based on migration of two components was employed to correct for drift in the separation. The within-day and between-day precision in peak height was 20%, in peak width 15%, and in adjusted migration time 0.03%. After normalization to total sample injected, the RSD in peak height reduced to 2-6%, which approaches the limit set by molecular shot noise in the number of molecules taken for analysis. PC12 cells were incubated with the labeled G(M1). Fluorescent microscopy demonstrated uptake by the cells. CE was used to separate a cellular homogenate prepared from these cells. A set of peaks was observed, which were tentatively identified based on comigration with the standards. Roughly 120 pL of homogenate was injected, which contained a total of 150 zmol of labeled substrate and products. Metabolite that preserves the fluorescent label can be detected at the yoctomole level, which should allow characterization of this metabolic pathway in single cells.     

Accuracy of distributed multipoles and polarizabilities: comparison between the LoProp and MpProp models

Localized multipole moments up to the fifth moment as well as localized dipole polarizabilities are calculated with the MpProp and the newly developed LoProp methods for a total of 20 molecules, predominantly derived from amino acids. A comparison of electrostatic potentials calculated from the multipole expansion obtained by the two methods with ab initio results shows that both methods reproduce the electrostatic interaction with an elementary charge with a mean absolute error of approximately 1.5 kJ/mol at contact distance and less than 0.1 kJ/mol at distances 2 A further out when terms up to the octupole moments are included. The polarizabilities are tested with homogenous electric fields and are found to have similar accuracy. The MpProp method gives better multipole moments unless diffuse basis sets are used, whereas LoProp gives better polarizabilities.     

An enzyme derivatized polydimethylsiloxane (PDMS) membrane for use in membrane introduction mass spectrometry (MIMS)

Membrane introduction mass spectrometry (MIMS) provides direct measurement of volatile and semivolatile analytes in condensed and gas-phase samples without sample preparation steps. Although MIMS has numerous advantages that include direct, on-line, real-time analysis with low detection limits, current applications of MIMS are predominantly limited to volatile and semivolatile analytes that permeate hydrophobic membranes (e.g., polydimethylsiloxane; PDMS). We report the first enzyme modified PDMS membrane for use with MIMS. This was achieved by immobilizing Candida rugosa lipase directly onto the surface of oxidized PDMS. These surface immobilized enzymes catalyze ester hydrolysis, releasing an alcohol product at the membrane interface that is readily detected. We have successfully used an enzyme modified membrane for the analysis and quantification of low-volatility and hydrophilic esters. We report the quantification of several carboxylic acid esters in dilute aqueous solutions, including a phthalate monoester carboxylate that is not readily detected by conventional MIMS. This new interface demonstrates the potential for extending the range and versatility of MIMS.     

A new approach to asymmetric feedback in a segmented broad area diode laser

We present the demonstration of a non-critical setup for asymmetric feedback in a segmented broad area diode laser. We compare the dependence of the beam quality on the position of the dispersive element for standard spectral beam combining and our new non-critical setup. We find that our new approach is significantly less critical to the position of the dispersive element. It is shown that we can displace the dispersive element by at least 50% of the focal length of the collimating lens away from the Fourier plane without compromising performance. Furthermore, our approach provides the same high beam quality as is possible using off-axis spectral beam combining. This provides the possibility of achieving a high beam quality in a more compact setup than previously possible.     

Non-Specific GH30_7 Endo-β-1,4-xylanase from Talaromyces leycettanus

This study describes the catalytic properties of a GH30_7 xylanase produced by the fungus Talaromyces leycettanus. The enzyme is an ando-β-1,4-xylanase, showing similar specific activity towards glucuronoxylan, arabinoxylan, and rhodymenan (linear β-1,3-β-1,4-xylan). The heteroxylans are hydrolyzed to a mixture of linear as well as branched β-1,4-xylooligosaccharides that are shorter than the products generated by GH10 and GH11 xylanases. In the rhodymenan hydrolyzate, the linear β-1,4-xylooligosaccharides are accompanied with a series of mixed linkage homologues. Initial hydrolysis of glucuronoxylan resembles the action of other GH30_7 and GH30_8 glucuronoxylanases, resulting in a series of aldouronic acids of a general formula MeGlcA²Xyl_n. Due to the significant non-specific endoxylanase activity of the enzyme, these acidic products are further attacked in the unbranched regions, finally yielding MeGlcA²Xyl_2-3. The accommodation of a substituted xylosyl residue in the −2 subsite also applies in arabinoxylan depolymerization. Moreover, the xylose residue may be arabinosylated at both positions 2 and 3, without negatively affecting the main chain cleavage. The catalytic properties of the enzyme, particularly the great tolerance of the side-chain substituents, make the enzyme attractive for biotechnological applications. The enzyme is also another example of extraordinarily great catalytic diversity among eukaryotic GH30_7 xylanases.