Unveiling Latent Photoreactivity of Imines

Unlike carbonyl compounds, it has long been common understanding that excited imines show virtually no photoreactivity, and hence their properties and potential utility in chemical science remain largely unexplored. Now, a strategy is presented for eliciting latent photoreactivity of imines based on the introduction of a donor–acceptor (D‐A) structure to extend the lifetime of their photoexcited states. A series of spectroscopic analyses and density functional theory calculations reveal unique photophysical properties of the D‐A‐type imines. Furthermore, the reactivity of the D‐A‐type imines is demonstrated by using them as a photoredox catalyst for atom‐transfer radical addition. These findings illuminate a previously neglected chemical space in the field of photochemistry, which will be exploited by taking advantage of the inherent structural modularity of imines.     

Photo‐Cross‐Linked Small‐Molecule Microarrays as Chemical Genomic Tools for Dissecting Protein–Ligand Interactions

We have developed a unique photo‐cross‐linking approach for immobilizing a variety of small molecules in a functional‐group‐independent manner. Our approach depends on the reactivity of the carbene species generated from trifluoromethylaryldiazirine upon UV irradiation. It was demonstrated in model experiments that the photogenerated carbenes were able to react with every small molecule tested, and they produced multiple conjugates in most cases. It was also found in on‐array immobilization experiments that various small molecules were immobilized, and the immobilized small molecules retained their ability to interact with their binding proteins. With this approach, photo‐cross‐linked microarrays of about 2000 natural products and drugs were constructed. This photo‐cross‐linked microarray format was found to be useful not merely for ligand screening but also to study the structure–activity relationship, that is, the relationship between the structural motif (or pharmacophore) found in small molecules and its binding affinity toward a protein, by taking advantage of the nonselective nature of the photo‐cross‐linking process.     

A new unnatural base pair system between fluorophore and quencher base analogues for nucleic acid-based imaging technology

In the development of orthogonal extra base pairs for expanding the genetic alphabet, we created novel, unnatural base pairs between fluorophore and quencher nucleobase analogues. We found that the nucleobase analogue, 2-nitropyrrole (denoted by Pn), and its 4-substitutions, such as 2-nitro-4-propynylpyrrole (Px) and 4-[3-(6-aminohexanamido)-1-propynyl]-2-nitropyrrole (NH(2)-hx-Px), act as fluorescence quenchers. The Pn and Px bases specifically pair with their pairing partner, 7-(2,2'-bithien-5-yl)imidazo[4,5-b]pyridine (Dss), which is strongly fluorescent. Thus, these unnatural Dss-Pn and Dss-Px base pairs function as reporter-quencher base pairs, and are complementarily incorporated into DNA by polymerase reactions as a third base pair in combination with the natural A-T and G-C pairs. Due to the static contact quenching, the Pn and Px quencher bases significantly decreased the fluorescence intensity of Dss by the unnatural base pairings in DNA duplexes. In addition, the Dss-Px pair exhibited high efficiency and selectivity in PCR amplification. Thus, this new unnatural base pair system would be suitable for detection methods of target nucleic acid sequences, and here we demonstrated the applications of the Dss-Pn and Dss-Px pairs as molecular beacons and in real-time PCR. The genetic alphabet expansion system with the replicable, unnatural fluorophore-quencher base pair will be a useful tool for sensing and diagnostic applications, as well as an imaging tool for basic research.     

Application of a wavelength-dispersive particle-induced X-ray emission system to chemical speciation of phosphorus and sulfur in lake sediment samples

The chemical speciation of phosphorus and sulfur in lake sediment was performed by analyzing Kα X-ray spectra recorded with a high-resolution wavelength-dispersive particle-induced X-ray emission (WD-PIXE) system. The concentrations of phosphorus and sulfur in the sediment were 2500 and 7000 ppm, respectively. To measure both minor elements in a reasonable measurement time, a 2-MeV proton beam with a high current density (6 nA/mm²) was used for the chemical speciation. The possible chemical state change caused by the proton irradiation was studied in order to determine the maximal irradiation time without significant change. We found that the chemical states of phosphorus and sulfur were stable under a beam current density of 6 nA/mm² and a measurement time of 60 min (phosphorus) and 90 min (sulfur). The chemical states of phosphorus and sulfur were determined to be P⁵⁺ and a mixture of S²⁻ and S⁶⁺, respectively.     

Electrogenerated Chemiluminescence of Donor–Acceptor Molecules with Thermally Activated Delayed Fluorescence

The electrochemistry and electrogenerated chemiluminescence (ECL) of four kinds of electron donor–acceptor molecules exhibiting thermally activated delayed fluorescence (TADF) is presented. TADF molecules can harvest light energy from the lowest triplet state by spin up‐conversion to the lowest singlet state because of small energy gap between these states. Intense green to red ECL is emitted from the TADF molecules by applying a square‐wave voltage. Remarkably, it is shown that the efficiency of ECL from one of the TADF molecule could reach about 50 %, which is comparable to its photoluminescence quantum yield.     

Sensitivity and specificity of the Sanita-kun Aerobic Count: internal validation and independent laboratory study

The Sanita-kun Aerobic Count consists of a transparent cover film, an adhesive sheet, a layer of nonwoven fabric, and a water-soluble compound film, including a culture medium formula for detection of aerobic microorganisms. The Sanita-kun sheet was validated for 14 food categories in an internal study and an independent study was conducted on ground beef and hot dogs. Both studies showed no significant difference in performance between 5 or 8 replicates of the Sanita-kun sheets and AOAC Method 966.23, excluding some lots of foods. The correlation coefficient to plate count agar in the internal accuracy study was 0.99. The average relative standard deviation for repeatability of total foods was 0.26 and 0.19, respectively, excluding < 10 average counts. The ruggedness study, which examined the influence of incubation temperature and period, recommended incubation of the Sanita-kun sheet at 32.5 +/- 2.5 degrees C for 46 +/- 2 h. Comparison of 3 lots of Sanita-kun sheets showed no decrease of performance in the older lot. The shelf-life of the sheet is at least 14 months. The Sanita-kun Aerobic Counts has been granted AOAC Performance Tested Method status.     

Cis-trans isomerization and 13C-NMR chemical shift of polyphenylacetylene

Before and after cis-trans isomerization, the observed ¹³C-NMR chemical shifts of poly(phenylacetylene) (PPA) in the solid state were investigated on the basis of ¹³C-NMR chemical shift calculations within AM1 for the cis-transoidal and deflected trans-transoidal forms. Two ¹³C-resonance peaks in the observed CP/MAS ¹³C-spectrum were assigned theoretically by the ¹³C chemical shifts of the main and side chains. After thermal isomerization, the ¹³C peak of the main chain for PPA shifted upfield by 3.5 ppm, in contrast to the downfield shift of the ¹³C peak for polyacetylene. This upfield shift of trans-PPA largely was attributed to the increases of the excitation energy from the ground state to the lowest φ_π–π* state in the paramagnetic terms of ¹³C chemical shift on the main chain carbons with the increase in deflected angle τ of 0 to 80°. The ±80° deflected conformation of the trans-transoidal chain due to the cis-trans isomerization was confirmed. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 1657–1664, 1999     

4-Deoxy-l-erythro-5-hexoseulose Uronate (DEH) and DEH Reductase: Key Molecule and Enzyme for the Metabolism and Utilization of Alginate

4-Deoxy-l-erythro-5-hexoseulose uronate (DEH), DEH reductase, and alginate lyase have key roles in the metabolism of alginate, a promising carbon source in brown macroalgae for biorefinery. In contrast to the widely reviewed alginate lyase, DEH and DEH reductase have not been previously reviewed. Here, we summarize the current understanding of DEH and DEH reductase, with emphasis on (i) the non-enzymatic and enzymatic formation and structure of DEH and its reactivity to specific amino groups, (ii) the molecular identification, classification, function, and structure, as well as the structural determinants for coenzyme specificity of DEH reductase, and (iii) the significance of DEH for biorefinery. Improved understanding of this and related fields should lead to the practical utilization of alginate for biorefinery.     

Development of a curie-point headspace sampler for capillary gas chromatography

A Curie-point headspace sampler (CPHS) equipped with a purge and trap sampler has been developed for use with capillary gas chromatography. The new system can handle a variety of samples, including gases, liquids, and solids, and can also be used as a pyrolyzer.