Neutron Scattering Techniques and Complementary Methods for Structural and Functional Studies of Biological Macromolecules and Large Macromolecular Complexes

Crystallography Reports - The review describes the application of small-angle scattering (SAS) of neutrons and complementary methods to study the structures of biomacromolecules. Here we cover SAS...     

Conformation of simple aromatic molecules

The conformation of five aromatic molecules were calculated using the atom-atom potentials method. The deformations of valency angles were not considered, and the conformations of some molecules were determined solely by the minimum interaction energy between non-bounded pairs of atoms. In case of molecules having π-bonds, the geometry of the isolated molecule was determined by the balance between the π-electron and the non-bonded energies. A comparison is made between the structure of molecules in the crystal form and the structure of the free molecules determined by conformational analysis. For terphenyl molecule which has different structures in the different phases, a calculation of the structure of molecule in crystal from was done theoretically using lattice energy minimization. Good agreement was found between structures obtained theoretically and experimentally.     

Movement of dopants in redox reaction of electro-conductive polymers

Polypyrrole, formed in an organic solvent, shows higher density and better quality in electrical conductivity and mechanical strength than that formed in water. On electrochemical reduction in an aqueous system the laurylsulfate anion, used as dopant, sticks to the polymer. During reduction a cation moves into the polymer and on oxidation it leaves the polymer. The anion, however, leaves the polymer on reduction in an organic solvent system and cannot penetrate into the polymer on re-oxidation. The redox reaction in the aqueous system reveals a surface reaction process, while the reaction in the organic solvent system undergoes a diffusion-controlled process. This penomenon is consistant with the results of the ion concentration profile.     

Chondroitin Sulfate Protects the Liver in an Experimental Model of Extra-Hepatic Cholestasis Induced by Common Bile Duct Ligation

During liver fibrogenesis, there is an imbalance between regeneration and wound healing. The current treatment is the withdrawal of the causing agent; thus, investigation of new and effective treatments is important. Studies have highlighted the action of chondroitin sulfate (CS) in different cells; thus, our aim was to analyze its effect on an experimental model of bile duct ligation (BDL). Adult Wistar rats were subjected to BDL and treated with CS for 7, 14, 21, or 28 days intraperitoneally. We performed histomorphometric analyses on Picrosirius-stained liver sections. Cell death was analyzed according to caspase-3 and cathepsin B activity and using a TUNEL assay. Regeneration was evaluated using PCNA immunohistochemistry. BDL led to increased collagen content with corresponding decreased liver parenchyma. CS treatment reduced total collagen and increased parenchyma content after 21 and 28 days. The treatment also promoted changes in the hepatic collagen type III/I ratio. Furthermore, it was observed that CS treatment reduced caspase-3 activity and the percentage of TUNEL-positive cells after 14 days and cathepsin B activity only after 28 days. The regeneration increased after 14, 21, and 28 days of CS treatment. In conclusion, our study showed a promising hepatoprotective action of CS in fibrogenesis induced by BDL.     

Crystal Structure and Computational Study of 5-Ethyl-4-(4-Methoxyphenethyl)-4,5-Dihydro-3H-1,2,4-Triazol-3-One and 4-(4-Methoxyphenethyl)-5-Propyl-4,5-Dihydro-3H-1,2,4-Triazol-3-One

Crystallography Reports - Molecular structures of compounds 5-ethyl-4-(4-methoxyphenethyl)-4,5-dihydro-3H-1,2,4-triazol-3-one, (C13H17N3O2) (I) and...     

A Sm(III) Coordination Polymer Containing 2,5-Furandicarboxylic Acid: Crystal Structure and Recognition of Oxalate in Water

Crystallography Reports - The {[Sm2(FDC)2](FDC) · 10H2O}n complex, where H2FDC is a 2,5-furandicarboxylic acid, has been prepared by hydrothermal reaction and structurally characterized by...     

Mechanical Properties of Diamond-Like Silicon–Carbon Films Doped with Vanadium

Crystallography Reports - The influence of doping with vanadium on the mechanical properties of nanocomposite films deposited on silicon substrates has been investigated. It is found that the...     

Dynamics of loop soliton solutions of $${\pmb {\mathcal {PT}}}$$PT-symmetric nonlocal short pulse equation

Nonlinear Dynamics - In this article, we present a system of coupled short pulse equations as integrability condition of associated generalized linear eigenvalue problem. We obtain system of...     

Emergence of Envelope Solitary Waves from Initial Localized Pulses within the Ostrovsky Equation

Radiophysics and Quantum Electronics - We study the emergence of steady wave packets in the form of envelope solitary waves (envelope solitons) which evolve from localized pulse-type initial...     

Modeling ExB drift transport in conceptual slot divertor configurations

At DIII-D, a slot divertor concept, called small-angle-slot (SAS), is under development, aiming to enable detachment at relatively low plasma edge density. We report on simulations using the SOLPS-ITER two-dimensional edge code to examine the performance of conceptual “SAS 2” slot configurations. The focus of the analysis is on E  ×  B drift effects on upstream density at detachment (UDD), with detachment marked by electron temperature T_e ≤ 3 eV at the outer strike point (OSP). With toroidal field such that radial E  ×  B drift carries particles from the OSP towards the private flux region (PFR), placing the OSP near the inner slot wall gives ≈20% lower UDD than having the OSP near the outer wall. The inner wall effectively traps the radial E  ×  B drift flux, resulting in low T_e and associated radial electric field in the PFR, and thus small losses from the slot to the inner target via poloidal E  ×  B drift flux. With toroidal field reversed such that radial E  ×  B drift is reversed, OSP placement near the inner wall gives ≈10% lower UDD than OSP placement near the outer wall. Although radial E  ×  B flux is from the OSP towards the outer wall, this flux largely escapes the slot, raising the UDD. A change in the slot shaping is suggested with the goal of eliminating such E  ×  B -driven particle losses from the slot.