Kinetic substituent and solvent effects in 1,3-dipolar cycloaddition of diphenyldiazomethanes with fullerenes C60 and C70: a comparison with the addition to TCNE, DDQ, and chloranil

Kinetics of 1,3-dipolar cycloaddition of a series of meta- and para-substituted diphenyldiazomethanes (DDMs) with fullerenes C60 and C70 as dipolarophiles have been investigated in toluene at 30 degrees C. Fullerene C60 was ca. 1.5 times more reactive than C70. The rate constants (k) for the primary [3 + 2] additions increased with the increase of the electron-releasing ability of the meta and para substituent. The log k/k0 values were well correlated by the Yukawa-Tsuno (Y-T) equations with the smaller negative rho values (-1.6 and -1.7 for C60 and C70) and the reduced resonance reaction constants r (0.22 and 0.17) compared to similar reactions of common acceptors, TCNE, DDQ, and chloranil (CA). The plots of log k (acceptor) versus log k (C60) as reference gave good regression equations and the slopes became larger in the order of TCNE > DDQ > CA > C70 > or = C60. The rates were also found to decrease with the increase of solvent polarity due to the ground-state solvation of fullerenes. However, the relative reactivity of these acceptors toward the unsubstituted DDM increased in the order of DDQ > C60 > or = C70 > TCNE > CA. The unexpected higher reactivity of fullerenes was interpreted in terms of the inherent steric strain by the pyramidalization of the sp2 C-atoms as well as the shorter [6,6] bonds with larger pi-electron densities.     

A graph theoretical approach to the effect of mutation on the flexibility of the DNA binding domain of p53 protein

Tumor suppressor protein p53 becomes inactive due to mutation on its DNA binding core domain leading to misbehavior of this protein and preventing its interaction with DNA. In the present study, changes of the protein conformation by five hot spot mutations of T-p53C were assessed preventing the mutants wild-type (WT) behavior. While studies of this nature were undertaken both experimentally and theoretically, the focus is fundamentally on the effects of the mutation on the dynamics of the protein. Hence, the basic concept underlying this study is the change in flexibility or rigidity of the protein. It was found that stable variant T-p53C (PDB-ID: 1uol) that is structurally and functionally very close to wild-type p53 is the most rigid structure and each single carcinogenic mutation on it makes the structure more flexible. We hypothesize that these changes of the molecule’s flexibility disrupt the network of hydrogen bonds associated with the interaction of WT not only at interaction but in the internal structures of the mutants as well, which prevents them from interacting in the WT fashion loosing the anti-cancer properties of WT.     

MassBank: a public repository for sharing mass spectral data for life sciences

MassBank is the first public repository of mass spectra of small chemical compounds for life sciences (<3000 Da). The database contains 605 electron‐ionization mass spectrometry(EI‐MS), 137 fast atom bombardment MS and 9276 electrospray ionization (ESI)‐MSⁿ data of 2337 authentic compounds of metabolites, 11 545 EI‐MS and 834 other‐MS data of 10 286 volatile natural and synthetic compounds, and 3045 ESI‐MS² data of 679 synthetic drugs contributed by 16 research groups (January 2010). ESI‐MS² data were analyzed under nonstandardized, independent experimental conditions. MassBank is a distributed database. Each research group provides data from its own MassBank data servers distributed on the Internet. MassBank users can access either all of the MassBank data or a subset of the data by specifying one or more experimental conditions. In a spectral search to retrieve mass spectra similar to a query mass spectrum, the similarity score is calculated by a weighted cosine correlation in which weighting exponents on peak intensity and the mass‐to‐charge ratio are optimized to the ESI‐MS² data. MassBank also provides a merged spectrum for each compound prepared by merging the analyzed ESI‐MS² data on an identical compound under different collision‐induced dissociation conditions. Data merging has significantly improved the precision of the identification of a chemical compound by 21–23% at a similarity score of 0.6. Thus, MassBank is useful for the identification of chemical compounds and the publication of experimental data. Copyright © 2010 John Wiley & Sons, Ltd.     

Benzoin reaction in water as an aqueous medium catalyzed by benzimidazolium salt

Benzoin reactions are catalyzed by N,N-dialkylbenzimidazole to yield α-hydroxy ketones; the reaction proceeds in water as an aqueous medium under mild conditions. The utility of these salts as pre-catalysts in these reactions has been demonstrated.     

Multi-scale theoretical study of support effect on sintering dynamics of Pt

The capability of theoretical durability studies to offer an efficient alternative methodology for predicting the potential performance of catalysts has improved in recent years. In this regard, multi-scale theoretical methods for predicting sintering behavior of Pt on various catalyst supports are being developed. Various types of Pt diffusions depending on support were confirmed by the micro-scale ultra accelerated quantum chemical molecular dynamics (UA-QCMD) method. Moreover, macro-scale sintering behavior of Pt/γ-Al₂O₃, Pt/ZrO₂ and Pt/CeO₂ catalysts were studied using a developed 3D sintering simulator. Experimental results were well reproduced. While Pt on γ-Al₂O₃ sintered significantly, Pt on ZrO₂ sintered slightly and Pt on CeO₂ demonstrated the highest stability against sintering.     

X-ray diffraction and magnetic susceptibility of sodium fullerides NaxC60

The X-ray diffraction (XRD), magnetic susceptibility and electron spin resonance (ESR) measurements have been carried out for Na_xC₆₀. The XRD profiles with x<4 can be assigned to a face-centered cubic (fcc) lattice, while those with 4≦x to a hexagonal one. The temperature dependence of magnetic susceptibility χ for Na_xC₆₀ using SQUID was fitted to the Curie law, and estimated temperature-independent component χ₀. The composition x dependence of the χ₀ for Na_xC₆₀ shows two maxima at around x=3 and x=10, and minimum at x=6. The absence of Pauli contribution at x=6 was confirmed using ESR. A trace of superconducting transition at 14 K has been found for some Na_xC₆₀ specimens with 8<x<9.     

Remarkable Charge Separation and Photocatalytic Efficiency Enhancement through Interconnection of TiO2 Nanoparticles by Hydrothermal Treatment

Although tremendous effort has been directed to synthesizing advanced TiO₂, it remains difficult to obtain TiO₂ exhibiting a photocatalytic efficiency higher than that of P25, a benchmark photocatalyst. P25 is composed of anatase, rutile, and amorphous TiO₂ particles, and photoexcited electron transfer and subsequent charge separation at the anatase–rutile particle interfaces explain its high photocatalytic efficiency. Herein, we report on a facile and rational hydrothermal treatment of P25 to selectively convert the amorphous component into crystalline TiO₂, which is deposited between the original anatase and rutile particles to increase the particle interfaces and thus enhance charge separation. This process produces a new TiO₂ exhibiting a considerably enhanced photocatalytic efficiency. This method of synthesizing this TiO₂, inspired by a recently burgeoning zeolite design, promises to make TiO₂ applications more feasible and effective.     

An application of MNDO calculation to borate polyhedra

MNDO, a semiempirical SCF-MO method, was applied to study the structure of the borate glass. The clusters, B(OH)₃, H₃B₃O₆, B₃O₆^3?, (HO)₂BOB (OH)₂, (HO)₂B₃O₃OB₃O₃ (OH)₂, BO₃[B(OH)₂]₃ and BO₃[B₃O₃(OH)₂]₃ were treated and their geometries, the heats of reactions, the π electron systems and electronic structures were discussed. The geometry and the electronic structures show a good correspondence with the experimental data. The resonance stabilization effect of the π electron system is not so large as to control the geometries and reactions.     

Momentum‐resolved resonant inelastic X‐ray scattering on a single crystal under high pressure

A single‐crystal momentum‐resolved resonant inelastic X‐ray scattering (RIXS) experiment under high pressure using an originally designed diamond anvil cell (DAC) is reported. The diamond‐in/diamond‐out geometry was adopted with both the incident and scattered beams passing through a 1 mm‐thick diamond. This enabled us to cover wide momentum space keeping the scattering angle condition near 90°. Elastic and inelastic scattering from the diamond was drastically reduced using a pinhole placed after the DAC. Measurement of the momentum‐resolved RIXS spectra of Sr_2.5Ca_11.5Cu₂₄O₄₁ at the Cu K‐edge was thus successful. Though the inelastic intensity becomes weaker by two orders than the ambient pressure, RIXS spectra both at the center and the edge of the Brillouin zone were obtained at 3 GPa and low‐energy electronic excitations of the cuprate were found to change with pressure.