Isolation of xylose reductase gene ofPichia stipitis and its expression inSaccharomyces cerevisiae

Applied Biochemistry and Biotechnology - A NADPH/NADH-dependent xylose reductase gene was isolated from the xylose-assimilating yeast,Pichia stipitis. DNA sequence analysis showed that the gene...     

Stereoselective synthesis of procyanidin B3-3-O-gallate and 3,3″-di-O-gallate, and their abilities as antioxidant and DNA polymerase inhibitor

A simple method for the synthesis of procyanidin B3 substituted with a galloyl group at the 3 and 3″ position is described. Condensation of a benzylated catechin-3-O-gallate electrophile with a nucleophile, catechin and catechin-3-O-gallate, proceeded smoothly and stereoselectively to afford the corresponding dimer gallates, procyanidin B3-3-O-gallate and procyanidin B3-3,3″-di-O-gallate, in good yields. Further, their antioxidant activities on UV-induced lipid peroxide formation, DPPH radical scavenging activity and inhibitory activity of DNA polymerase were also investigated. Among three procyanidin B3 congeners (procyanidin B3, 3-O-gallate and 3,3″-di-O-gallate), the 3,3″-di-O-gallate derivative showed the strongest antioxidant and radical scavenging activity. Interestingly, the 3-O-gallate derivative was the strongest inhibitor of mammalian DNA polymerase with IC₅₀ value of 0.26 μM, although it showed the weakest antioxidant and radical scavenging activity. It became apparent that the presence of a galloyl group at the C-3 position in the proanthocyanidin oligomer was very important for biological activity, however, the antioxidant activity of these compounds was not parallel to the DNA polymerase inhibitory activity.     

Phase-death mode in two-coupled chemical oscillators studied with reactors of different volume and by simulation

The behavior of the phase-death mode (cessation of oscillations and transition to a steady state) in the two-coupled Belousov–Zhabotinsky reactions is studied in the asymmetric coupling. In an experiment, the types of synchronized modes and their regions were investigated as an extension of our previous study. This experiment is compared to a simulation using the two-coupled three-variable Oregonator models. The results confirm that the phase-death mode changes from “bistable” to “monostable” and reveal the stable region of the latter.     

Mechanistic studies on the binding of nitric oxide to a synthetic heme-thiolate complex relevant to cytochrome p450

The synthetic heme-thiolate complex (SR) in methanol binds nitric oxide (k(on) = (2.7 +/- 0.2) x10(6) M(-)(1) s(-)(1) at 25 degrees C) to form SR(NO). The binding of NO to the SR complex in a noncoordinating solvent, such as toluene, was found to be almost 3 orders of magnitude faster than that in methanol. The activation parameters DeltaH(), DeltaS(), and DeltaV() for the formation of SR(NO) in methanol are consistent with the operation of a limiting dissociative mechanism, dominated by dissociation of methanol in SR(MeOH). In the presence of an excess of NO, the formation of SR(NO) is followed by subsequent slower reactions. The substantially negative activation entropy and activation volume values found for the second observed reaction step support an associative mechanism which involves attack of a second NO molecule on the thiolate ligand in the initially formed SR(NO) complex. The following slower reactions are strongly accelerated by a large excess of NO or by the presence of NO(2)(-) in the SR/NO reaction mixture. They can be accounted for in terms of dynamic equilibria between higher nitrogen oxides (NO(x)()) and reactive SR species, which lead to the formation of a nitrosyl-nitrite complex of SR(Fe(II)) as the final product. This finding is clearly supported by laser flash photolysis studies on the SR/NO reaction mixture, which do not reveal simple NO photolabilization from SR(Fe(III))(NO), but rather involve the generation of at least three photoinduced intermediates decaying with different rate constants to the starting material. The species formed along the proposed reaction pathways were characterized by FTIR and EPR spectroscopy. The results are discussed in terms of their relevance for the biological function of cytochrome P450 enzymes and in context of results for the reaction of NO with imidazole- and thiolate-ligated iron(III) hemoproteins.     

Improvement of culture conditions forl-proline production by a recombinant strain ofSerratia marcescens

Serratia marcescens SP511 was previously reported to be anl-proline-producing strain that harbors a recombinant plasmid carrying the mutant type of the proline operon. This strain produced 65 g/L ofl-proline in a medium containing 22% sucrose and urea after 5 d of incubation under the conventional culture conditions. We searched for more suitable culture conditions for more abundantl-proline production by SP511. To improve the supply of a nitrogen source to cells, ammonium was used instead of urea and fed to a culture under control of the pH of the medium. The concentrations of MgSO₄ and K₂HPO₄ were increased, and in addition, sucrose was continuously added to the culture at a final concentration of 32%. Under these conditions, the cell amount was increased twofold over that under the previous conditions andl-proline production reached a maximum of more than 100 g/L after 4 d of incubation.     

Preparation of polysiloxanes from silicic acid. III. Preparation and properties of polysilicic acid butyl esters

Polysilicic acid butyl esters were prepared from 1-butanol and silicic acid extracted from sodium metasilicate solution and water glass with tetrahydrofuran and hydrochloric acid. The properties of the esters were dependent on the degree of esterification (DE). The esters with a DE of less than ca. 60% could be isolated by precipitation with hexane and were highly liable to self-condensation, whereas those with more than 60% DE were soluble in solvents and could not be precipitated easily. They underwent further condensation to form highly polymerized esters. Subsequent silylation allowed the isolation and characterization of these esters. The solvent-soluble silylated esters had moderate thermal stability with decomposition points between 210 and 260°C and number-average molecular weights of 10,000–30,000. From the evaluation of units structures of silylate it was suggested that polymer backbone was a pseudoladder structure.     

Syntheses and Characterization of Polymetallosiloxanes from Silicic Acid and Metal Chlorides

Syntheses and characterization of polymetallosiloxanes by the non-hydrolysis sol-gel process using no metal alkoxides were investigated. The reaction of silicic acid (SA) with MCl₄ (M = Ti, Zr) in the molar ratios SA/MCl₄ = 0.5–3.0 using a tetrahydrofuran-methanol solvent formed polymetallosiloxane (PMS), which was insoluble in organic solvents regardless of the molar ratio. The PMS was isolated as esterified polymetallosiloxane by esterification with isopropyl alcohol for various periods, which were soluble in methanol, acetone, and tetrahydrofuran. The number average molecular weight was 1000–3200 for esterified polytitanosiloxane and 3400–11000 for esterified polyzirconosiloxane. Esterified polymetallosiloxanes had no melting point but decomposition point. The results of analytical data indicated that esterified polymetallosiloxane and/or polymetallosiloxane consisted of the main chain of Si–O–Si and Si–O–M linkage with the pendants of alkoxy, silanol, and chloro group.     

Cooperative motions of protein and hydration water molecules: molecular dynamics study of scytalone dehydratase

Two molecular dynamics (MD) simulations totaling 25 ns of simulation time of monomeric scytalone dehydratase (SD) were performed. The enzyme has a ligand-binding pocket containing a cone-shaped alpha+beta barrel, and the C-terminal region covers the binding pocket. Our simulations clarified the difference in protein dynamics and conformation between the liganded protein and the unliganded protein. The liganded protein held the ligand molecule tightly and the initial structure was maintained during the simulation. The unliganded protein, on the other hand, fluctuated dynamically and its structure changed largely from the initial structure. In the equilibrium state, the binding pocket was fully solvated by opening of the C-terminal region, and the protein dynamics was connected with hydration water molecules entry into and release from the binding pocket. In addition, the cooperative motions of the unliganded protein and the hydration water molecules produced the path through the protein interior for ligand binding.