Hydrolysis of DNA by cerium(IV)/EDTA complex

Homogeneous solutions are formed from equimolar amounts of Ce(NH₄)₂(NO₃)₆ and EDTA. These solutions hydrolyze single-stranded DNA far more efficiently than double-stranded DNA. In contrast, Ce(IV) hydroxide gel, obtained in the absence of EDTA, hydrolyzes both single-stranded and double-stranded DNAs at almost the same rates. In order to achieve this substrate-specificity sufficiently, the mole ratio of EDTA to Ce(NH₄)₂(NO₃)₆ must be 1.0 or greater. By using this remarkable specificity of Ce(IV)/EDTA complex, gap-site in substrate DNA is selectively hydrolyzed. The scission-site is modulated by use of appropriate combination of oligonucleotide additives. The reactions have been kinetically analyzed.     

Hydroxylation of ionized aromatics including carboxylic acid or amine using recombinant Streptomyces lividans cells expressing modified biphenyl dioxygenase genes

The bphA1(2072)A2A3A4 gene cluster codes for a shuffled biphenyl dioxygenase holoenzyme with broad substrate specificity. These bphA1(2072)A2A3A4 genes were expressed in the actinomycetes Streptomyces lividans using a thiostrepton-inducible promoter P_tipA. Biotransformation experiments of various aromatics including carboxylic acid or amine in their molecular structure, such as 1-naphthoic acid, 2-(1-naphthyl)acetic acid, diphenylamine, and 1-benzyl-4-piperidone, were performed using the recombinant S. lividans cells. These ionized aromatics were converted to the corresponding 1,2-dihydrodiol, mono- or tri-hydroxy forms in 48 h. The structure of the converted products was determined by their EI-MS, ¹H- and ¹³C NMR analysis, and several products were found to be novel compounds.     

Solvation effects in near-critical binary mixtures

A Ginzburg-Landau theory is presented to investigate solvation effects in near-critical polar fluid binary mixtures. Concentration dependence of the dielectric constant gives rise to a shell region around a charged particle within which solvation occurs preferentially. As the critical point is approached, the concentration has a long-range Ornstein-Zernike tail representing strong critical electrostriction. If salt is added, strong coupling arises among the critical fluctuations and the ions. The structure factors of the critical fluctuations and the charge density are calculated and the phase transition behavior is discussed.     

Second-derivative spectrophotometric study on the interactions of chlorpromazine and triflupromazine with bovine serum albumin

The second-derivative spectra of chlorpromazine (CPZ) or triflupromazine (TFZ) in buffer solutions (pH 7.4) containing various amounts of BSA (the reference solutions contained the same amount of BSA) showed derivative isosbestic points. The residual background signals derived from incomplete suppression of BSA signals can be entirely eliminated in the second-derivative spectra and BSA has spectrophotometrically one kind of binding site for CPZ or TFZ. The fractions of the drugs bound to BSA were calculated from the derivative intensity differences (ΔD values) of CPZ or TFZ before and after the addition of BSA. Scatchard plot experiments suggested that the binding of the drugs to BSA could be explained as a partition like non-specific binding model. The association constants (K) of CPZ or TFZ with BSA were calculated from the ΔD values according to the non-specific binding model by a nonlinear least-squares method. The K values were almost constant for all of the drug concentrations studied, and good reproducibility was obtained. The fractions predicted by the K values were in good coincidence to the observed values. These results confirm the usefulness of the proposed derivative method which does not need any separation procedures.     

Pd-catalyzed selective addition of heteroaromatic C-H bonds to C-C triple bonds under mild conditions

Simple heteroarenes such as pyrroles and indoles undergo addition reactions to C-C triple bonds in the presence of a catalytic amount of Pd(OAc)(2) under very mild conditions, affording cis-heteroarylalkenes in most cases. The cleavage of aromatic C-H bonds is the possible rate-determining step in CH(2)Cl(2), and the addition of heteroaromatic C-H bonds to C-C triple bonds is in a trans-fashion.     

Spectroscopic and excited-state properties of tri-9-anthrylborane I: Solvent polarity effects

Spectroscopic and excited-state properties of tri-9-anthrylborane (TAB), showing unique absorption and fluorescence characteristics originating from p(boron)-pi(anthryl group) orbital interactions, were studied in 12 solvents. Although the absorption maximum energy (nu(a)) of TAB which appeared at around 21 x 10(3) cm(-1) (band I) was almost independent of the solvent polarity parameter, f(X) (f(X) = (D(s) - 1)/(2D(s) + 1) - (n(2) - 1)/(2n(2) + 1) where D(s) and n represent the static dielectric constant and the refractive index of a solvent, respectively), the fluorescence maximum energy (nu(f)) showed a linear correlation with f(X). The f(X) dependence of the value of nu(a) - nu(f) demonstrated that the change in the dipole moment of TAB upon light excitation was approximately 8.0 D, indicating that absorption band I was ascribed to an intramolecular charge-transfer transition in nature. The excited electron of TAB was thus concluded to localize primarily on the p orbital of the boron atom. Furthermore, it was shown that the fluorescence lifetime and quantum yield of TAB varied from 11.8 to 1.1 ns and from 0.41 to 0.02, respectively, with an increase in f(X). The present results indicated that the nonradiative decay rate constant (k(nr)) of TAB was influenced significantly by f(X). Excited-state decay of TAB was understood by intramolecular back-electron (charge) transfer from the p orbital of the boron atom to the pi orbital of the anthryl group, which was discussed in terms of the energy gap dependence of k(nr). Specific solvent interactions of TAB revealed by the present spectroscopic and photophysical studies are also discussed.     

New crystal structures of β-[Ni(NCS)2(4-methylpyridine)4] clathrates with furan,tetrahydrofuran, methylene chloride,benzene + ethanol and methylcellosolve as guest molecules

Single crystal X-ray structures of clathrates of -[Ni(NCS)₂(4-methylpyridine)₄] with furan, tetrahydrofuran, benzene + ethanol, methylene chloride, and methylcellosolve as guests molecules are reported. The location of the guest molecule in the partially decomposed clathrate with methylene chloride was defined by X-ray diffraction and compared with the fully occupied one. The host lattices of all clathrates studied are tetragonal (I4₁/a) and do not differ significantly from typical -phase clathrates of [M(NCS)₂(4-methylpyridine)₄] (M = divalent metal cation). Arrangements of guest molecules represent different types of packing: one type of guest molecule occupies both possible types of positions, two different guest molecules occupy different positions, with only one type of positions occupied by one type of guest molecule. Possible stoichiometries of clathrates with -type lattices are discussed.Presented at the Sixth International Seminar on Inclusion Compounds, Istanbul, Turkey, 27–31 August 1995.     

Unexpected, drastic effect of triflic acid on oxidative diacetoxylation of iodoarenes by sodium perborate. A facile and efficient one-pot synthesis of (diacetoxyiodo)arenes

An easy, safe, and effective method for preparing (diacetoxyiodo)arenes from iodoarenes is presented. Addition of trifluoromethanesulfonic acid (triflic acid) as a promoter causes a drastic increase in the yield of (diacetoxyiodo)arenes in the reaction of iodoarenes with sodium perborate. The reaction of the iodoarenes with sodium perborate in acetic acid in the presence of triflic acid at 40-45 degrees C efficiently generates the corresponding (diacetoxyiodo)arenes in high yields within short time.     

Computer simulation for the cooligomerization system

In order to clarify the kinetic features of the styrene (A)–methyl methacrylate (B)–CCl₄(S) cooligomerization system, a computer simulation was carried out. The experimental data on the degree of polymerization and the deviation of the cooligomer composition from the statistical steady-state composition were comparatively well explained by calculations based on the kinetic equations derived from the assumed reaction scheme and the values of the velocity coefficients, although the values of the four velocity coefficients in the initiation step and the velocity coefficient of the termination by the coupling of two solvent radicals were estimated. The results of the calculation of the rate of each component reaction show that the following two reactions are the most important in the initiation and in the transfer and termination steps when the [S]/([A] + [B]) ratio is large: where, A, A*, and P are styrene, polystyryl radical, and the cooligomer, respectively. Moreover, it was concluded that the deviation of the cooligomer composition from the statistical steady-state composition was caused by these two reactions.     

Phototriggered self-assembly of hydrogen-bonded rosette

Azobenzene-appended melamine M2 and barbiturate B2, both possessing bulky tridodecyloxyphenyl (TDP) wedge(s), were designed and synthesized to establish a photoresponsive hydrogen-bonded supramolecular assembly. The geometrical isomer EE-M2 bearing two E-azobenzene moieties easily complexed with B2, affording a remarkably stable cyclic hexamer EE-M2(3).B2(3) (rosette) in chloroform, toluene, and methylcyclohexane, as confirmed by size exclusion chromatography, dynamic light scattering, (1)H NMR, and UV-vis studies. The E --> Z photoisomerization of the azobenzene moieties upon irradiation with UV light was significantly suppressed in the rosette because of the steric crowding of the TDP wedges (total of nine TDP wedges in a rosette), whereas irradiation of the monomeric EE-M2 resulted in facile transformation into ZZ-M2 bearing two Z-azobenzene moieties. (1)H NMR studies of the complexation of the initially photogenerated ZZ-M2 with B2 revealed that it is hard for ZZ-M2 to form a rosette with B2 because of the intermolecular steric interaction between the TDP wedges. The photoregulatable complexation efficiency of M2 allowed us to accomplish the phototriggered formation of the rosette by irradiation of a monomeric mixture of ZZ-M2 and B2 using visible light.