Lignin biodegradation by the ascomyceteChrysonilia sitophila

The lignin biodegradation process has an important role in the carbon cycle of the biosphere. The study of this natural process has developed mainly with the use of basidiomycetes in laboratory investigations. This has been a logical approach since most of the microorganisms involved in lignocellulosic degradation belong to this class of fungi. However, other microorganisms such as ascomycetes and also some bacteria, are involved in the lignin decaying process. This work focuses on lignin biodegradation by a microorganism belonging to the ascomycete class,Chrysonilia sitophila. Lignin peroxidase production and characterization, mechanisms of lignin degradation (lignin model compounds and lignin in wood matrix) and biosynthesis of veratryl alcohol are outstanding. Applications of C.sitophila for effluent treatment, wood biodegradation and single-cell protein production are also discussed.     

Radioresistance studies in Methylobacterium spp.

Methylobacterium extorquen was isolated and was found as one of the most resistant microorganisms in the original bioburden of ophthalmic cotton dressings to be submitted to γ radiation sterilization. Radiation survival curves were simultaneously performed in phosphate buffer and in test-pieces on two isolates, one obtained before irradiation (wild strain) and the other after irradiation at 20 kGy (rad strain), as well as on three type strains of Methylobacterium spp. (M. extorquens^T, M. radiotolerans^T and M. fujisawaense^T). The radiation resistance was compared using D_values. To analyze the effect of non linearity on radioresistance other measures were applied, such as intercept point, fraction of surviving cells at a selected dose and area. The ranking of strains with these approaches showed to be different, pointing out the need of an integrated measure of radioresistance. Therefore, an index of relative survival (IRS) is proposed.     

Adsorption of silanes bearing nitrogenated Lewis bases on SiO2/Si (100) model surfaces

The present paper describes the one-pot procedure for the formation of self-assembled thin films of two silanes on the model oxidized silicon wafer, SiO2/Si. SiO2/Si is a model system for other surfaces, such as glass, quartz, aerosol, and silica gel. MALDI-TOF MS with and without a matrix, XPS, and AFM have confirmed the formation of self-assembled thin films of both 3-imidazolylpropyltrimethoxysilane (3-IPTS) and 4-(N-propyltriethoxysilane-imino)pyridine (4-PTSIP) on the SiO2/Si surface after 30 min. Longer adsorption times lead to the deposition of nonreacted 3-IPTS precursors and the formation of agglomerates on the 3-IPTS monolayer. The formation of 4-PTSIP self-assembled layers on SiO2/Si is also demonstrated. The present results for the flat SiO2/Si surface can lead to a better understanding of the formation of a stationary phase for affinity chromatography as well as transition-metal-supported catalysts on silica and their relationship with surface roughness and ordering. The 3-IPTS and 4-PTSIP modified SiO2/Si wafers can also be envisaged as possible built-on-silicon thin-layer chromatography (TLC) extraction devices for metal determination or N-heterocycle analytes, such as histidine and histamine, with "on-spot" MALDI-TOF MS detection.     

Performance parameters of a whole body counter

Techniques for the assessment of internally incorporated radionuclides are essential for monitoring potentially exposed workers to radiation as well as for the preparedness of response in the case of Radiological Emergencies. The Whole Body Counter at Instituto Tecnológico e Nuclear (ITN), Portugal, provides a direct way of measuring the activity of internally incorporated radionuclides in possibly contaminated persons. This equipment is calibrated in energy and efficiency, with a calibration source, and is able to detect and quantify several radionuclides with gamma emissions between 60 and 1900 keV. Also, the Minimum Detectable Activity values for several nuclides of interest were determined, since these values are an indication of the sensitivity of the detection system. Finally, in order to assure reliable measurements, a quality assurance routine has been implemented, consisting of routinely monitoring several parameters of chosen radionuclides with gamma emission energies lying in the energy range of interest, and also for the background. The equipment is now fully operational and a set of routine measurements for the monitoring of exposed personnel, working in different areas of activity, is currently being prepared.     

Knot exteriors with all possible meridional essential surfaces

We show the existence of infinitely many knots where each exterior contains meridional essential surfaces of independently unbounded genus and number of boundary components. In particular, we construct examples of knot exteriors each of which has all possible compact orientable surfaces embedded as meridional essential surfaces. From these results, we also prove the existence of a hyperbolic knot exterior, not necessarily of a knot in the 3-sphere, for which there are meridional essential surfaces of simultaneously unbounded genus and number of boundary components.     

Antisense-mediated isoform switching of steroid receptor coactivator-1 in the central nucleus of the amygdala of the mouse brain

Background

Antisense oligonucleotide (AON)-mediated exon skipping is a powerful tool to manipulate gene expression. In the present study we investigated the potential of exon skipping by local injection in the central nucleus of the amygdala (CeA) of the mouse brain. As proof of principle we targeted the splicing of steroid receptor coactivator-1 (SRC-1), a protein involved in nuclear receptor function. This nuclear receptor coregulator exists in two splice variants (SRC-1a and SRC-1e) which display differential distribution and opposing activities in the brain, and whose mRNAs differ in a single SRC-1e specific exon.

Methods

For proof of principle of feasibility, we used immunofluorescent stainings to study uptake by different cell types, translocation to the nucleus and potential immunostimulatory effects at different time points after a local injection in the CeA of the mouse brain of a control AON targeting human dystrophin with no targets in the murine brain. To evaluate efficacy we designed an AON targeting the SRC-1e-specific exon and with qPCR analysis we measured the expression ratio of the two splice variants.

Results

We found that AONs were taken up by corticotropin releasing hormone expressing neurons and other cells in the CeA, and translocated into the cell nucleus. Immune responses after AON injection were comparable to those after sterile saline injection. A successful shift of the naturally occurring SRC-1a:SRC-1e expression ratio in favor of SRC-1a was observed, without changes in total SRC-1 expression.

Conclusions

We provide a proof of concept for local neuropharmacological use of exon skipping by manipulating the expression ratio of the two splice variants of SRC-1, which may be used to study nuclear receptor function in specific brain circuits. We established that exon skipping after local injection in the brain is a versatile and useful tool for the manipulation of splice variants for numerous genes that are relevant for brain function.     

Complex and superlattice stacking faults in D019 Co3W

Planar defects present in annealed D0₁₉?Co₃W crystals have been investigated by conventional transmission electron microscopy. Although a predominance of superlattice stacking faults was observed, five antiphase boundaries and four complex stacking faults were identified. All planar defects were observed in locked configurations or ended at grain boundaries. A comparison of relative defect energies has been carried out with a geometrical model based on pairwise interaction energies. The results suggest that the relative number of defects is not directly related to their expected energy, but rather has origin in locked configurations adopted during crystal growth and annealing.     

Resolvent analysis in unbounded flows: role of free-stream modes

Theoretical and Computational Fluid Dynamics - The problem of finding optimal forcing and response for unbounded base flows, exemplified by the Blasius boundary layer, is assessed by means of a...