Protein boson peak originated from hydration-related multiple minima energy landscape

The boson peak is a broad peak found in the low-frequency region of inelastic neutron and Raman scattering spectra in many glassy materials, including biopolymers below approximately 200 K. Here, we give a novel insight into the origins of the protein boson peak, which may also be valid for materials other than proteins. Molecular simulation reveals that the structured water molecules around a protein molecule increase the number of local minima in the protein energy landscape, which plays a key role in the origin of the boson peak. The peak appears when the protein dynamics are trapped within a local energy minimum at cryogenic temperatures. This trapping causes very low frequency collective motions to shift to higher frequencies. We demonstrate that the characteristic frequency of such systems shifts higher as the temperature decreases also in model one-dimensional energy surfaces with multiple minima.     

Synthesis and DNA strand breakage activity of some 1,4-diazepines

Reactions of 1,3-propanediamine with alpha-dicarbonyl compounds (1a-e) were examined and various condensed heterocyclic compounds such as 1,4-diazepines (2) and 3-pyrimidine derivatives (3) were obtained. Some of 1,4-diazepines (2) showed DNA strand breakage activity.     

Algorithm for rapid calculation of excluded volume of large molecules

An algorithm is described for rapid calculation of excluded volume of large molecules. The excluded volume is defined based on coordinates of constituent atoms as the volume of overlapping spheres, each standing for a space around an atom inaccessible for a solvent molecule. A computer program based on the algorithm has been tested on a protein, ovomucoid. The accuracy of the numerical calculation is discussed.     

Real time monitoring of drug metabolic enzyme response inside human hepatoma GS‐3A4‐HepG2 cells by means of electrochemical impedance measurement

Cytochrome P‐450s (CYPs) are important biopolymers for the maintenance of cellular function. If metabolic activity of the CYP in the cells can be estimated, so can the function of metabolism, which is closer to the organism. In this research, the method of measuring the drug metabolic activity inside the cell by making use of an electrochemical technique was examined. Human hepatoma GS‐3A4‐HepG2 cells of which the cytochrome P‐4503A4 (CYP3A4) drug metabolic activity is found to be the same as that of primary hepatocytes were used in the experiment. The GS‐3A4‐HepG2 cells were cultured on an indium‐tin oxide (ITO) electrode until they became confluent. Substrate testosterone and inhibitor ketoconazole of CYP3A4 were exposed to cells cultured on an ITO electrode, and the reaction was observed by noting the electrochemical impedance measurement. Impedance was decomposed into the resistance component and the reactance component, and each was examined in detail. As a result, according to testosterone concentration change, there was a remarkable time change in the reactance component. A similar impedance measurement was done by using human hepatoma HepG2 cells in which the drug metabolic activity had extremely decreased. Nevertheless, no time change in the reactance component that was noticed in GS‐3A4‐HepG2 cells was observed. Next, the amount of metabolite in the solution after impedance measurement was measured by means of liquid chromatography‐tandem mass spectroscopy (LC‐MS/MS). In the experiment with GS‐3A4‐HepG2 cells, a testosterone concentration‐dependent correlation was observed between the reactance component change and the amount of metabolite. But, in the impedance measurement by ketoconazole, the change in reactance components was not observed in either the GS‐3A4‐HepG2 cells or the HepG2 cells. Ketoconazole and the heme iron in CYP3A4 effect the coordination bond, but ketoconazole was not metabolized by CYP3A4. It was confirmed that the time change in the reactance component which was caused by the testosterone was detected neither in the cells that take up the substrate, nor in the coordination bond between the CYP enzyme and the drug. Therefore, the time change in the remarkable reactance component observed by this electrochemical impedance measurement is dependent on drug metabolic activity. An electrochemical drug metabolic activity measuring method with the human hepatoma GS‐3A4‐HepG2 cells was able to be established. Copyright © 2004 John Wiley & Sons, Ltd.     

Mycapolyols A-F, new cytotoxic metabolites of mixed biogenesis from the marine sponge Mycale izuensis

[structure: see text]. Mycapolyols A-F (1-6), six new unusual PKS/NRPS metabolites, were isolated from the marine sponge Mycale izuensis. The gross structures were elucidated by analysis of spectroscopic data, while the stereochemistry was established using chemical method and the universal NMR database.     

Optimum conditions for effective use of the terminating ion in transient isotachophoresis for capillary zone electrophoretic determination of nitrite and nitrate in seawater,with artificial seawater as background electrolyte

We have examined transient isotachophoresis (ITP) conditions, e.g. the nature of the terminating ion, its concentration, and the injection procedure, to improve the limit of detection (LOD) for determination of nitrite and nitrate in seawater by capillary zone electrophoresis (CZE). Artificial seawater containing 3.0 mmol L(-1) cetyltrimethylammonium chloride (CTAC) was used as background electrolyte (BGE). After sample injection 600 mmol L(-1) acetate was separately injected into the capillary as the terminating ion for transient ITP. The LOD for nitrite and nitrate, obtained at a signal-to-noise ratio (S/N) of 3, were 15 and 7.0 microg L(-1) (as nitrogen), respectively. Relative standard deviations (RSD) of peak area for nitrite and nitrate were 7.3 and 0.8%, respectively, and the RSD of peak height were 5.7 and 1.2%, respectively, when the concentrations of nitrite and nitrate were 0.05 and 0.25 mg L(-1). The RSD of migration time for these ions was 0.2%. The proposed method was applied to the determination of nitrite and nitrate in seawater samples. The results for nitrite were nearly in agreement with those obtained by naphthylethylenediamine spectrophotometric analysis (SPA; correlation coefficient 0.9041).     

Studies on pyrazines. 13 . Chlorination of 1-hydroxy-2(1H)-pyrazinones with phosphoryl chloride. Formation of 2,5-dichloro-3-phenylpyrazine from 1-hydroxy-3-phenyl-2(1H)-pyrazinone

The chlorination of 1-hydroxy-3-phenyl-2(1H)-pyrazinone with phosphoryl chloride proceeded to 5-chloro-3-phenyl-2(H)-pyrazinone or 2,5-dichloro-3-phenylpyrazine on heating to elevated temperatures. To define the mechanism of the novel formation, reactions of the parent or methyl-substituted 1-hydroxy-2(1H)-pyraz-inones with the same reagent were investigated.     

A layered tungstic acid H2W2O7 x nH2O with a double-octahedral sheet structure: conversion process from an aurivillius phase Bi2W2O9 and structural characterization

The conversion process of an Aurivillius phase, Bi(2)W(2)O(9), into a layered tungstic acid by hydrochloric acid treatment has been investigated, and resultant H(2)W(2)O(7) x nH(2)O has been fully characterized. The c parameter of Bi(2)W(2)O(9) [2.37063(5) nm] decreases to 2.21(1) nm in an acid-treated product dried at ambient temperature. The a and b parameters of Bi(2)W(2)O(9) [a = 0.54377(1) nm and b = 0.54166(1) nm] also decrease slightly to a = 0.524(1) nm and b = 0.513(1) nm in the acid-treated product dried at ambient temperature, indicating structural changes in the ReO(3)-like slabs in Bi(2)W(2)O(9) upon acid treatment. Drying at 120 degrees C leads to a further decrease in the c parameter [1.86(1) nm] with no notable change in the a and b parameters [a = 0.5249(2) nm and b = 0.513(2) nm]. The formation of an expandable layered structure is demonstrated by the successful intercalation of n-octylamine [interlayer distance 2.597(9) nm] and n-dodecylamine [interlayer distance 3.56(2) nm]. The compositions of the acid-treated products are determined to be H(2)W(2)O(7) x nH(2)O typically with n = 0.58 for the air-dried product and n = 0 for the product dried at 120 degrees C. As a consequence, the composition of the layer is H(2)W(2)O(7), and the decrease in the c parameter upon drying is ascribable to the loss of interlayer water. Scanning electron microscopy reveals no morphological change during acid treatment, which strongly suggests a selective leaching of the bismuth oxide sheets as a reaction mechanism. High-resolution transmission electron microscopy (HREM) observation of the acid-treated product shows consistency with a structural model for H(2)W(2)O(7), derived from Bi(2)W(2)O(9) through removal of the bismuth oxide sheets and contraction along the c axis. HREM observation also reveals that the WO(6) octahedra arrangement changes slightly with acid treatment. A one-dimensional electron density map projected on the c axis for the product dried at 120 degrees C, H(2)W(2)O(7), shows good consistency with that calculated for the structural model.     

3,4-Dihydroxystyrene dimers, inducers of larval metamorphosis in ascidians, from a marine sponge Jaspis sp.

Four new 3,4-dihydroxystyrene dimers (3, 4, 5, and 9) have been isolated from a marine sponge Jaspis sp. along with the known narains (1 and 2), of which 3–5 induced metamorphosis of ascidian Halocynthia roretzi larvae. Structures of these metabolites were elucidated on the basis of spectral data. Biogenesis of these compounds is also discussed.     

Exchange characteristics of monocarboxylic acids and monosulfonic acids onto anion-exchange resins

In the previous paper (N. Kanazawa, K. Urano, N. Kokado, Y. Urushigawa, J. Colloid Interface Sci. 238 (2001) 196), the equilibria of propionic acid and benzoic acid adsorption onto three anion-exchange resins were investigated, and an equation was proposed that summed of the physical adsorption of the carboxylic acid molecule and the ion exchange of the dissociated carboxylate ion. The ion exchange equation, including a selectivity coefficient to chloride ion for each combination between carboxylate ions and anion-exchange resins, could be used in wide ranges of concentration and pH. In this research, ion-exchange equilibria using 16 anion-exchange resins and 9 organic acids including monocarboxylic and monosulfonic acids were investigated. It could be confirmed that the proposed equation applied to the ion exchange with these monoorganic acids. Characteristics of ion exchange between the organic anions and anion exchange were also studied by the selectivity coefficients.