Second SH3 domain of ponsin solved from powder diffraction

Determination of protein crystal structures is dependent on the growth of high-quality single crystals, a process that is not always successful. Optimum crystallization conditions must be systematically sought for, and microcrystalline powders are frequently obtained in failed attempts to grow the desired crystal. In materials science, structures of samples ranging from ceramics, pharmaceuticals, zeolites, etc., can nowadays be solved, almost routinely, from powdered samples, and there seems to be no fundamental reason, except the sheer size and complexity of the structures involved, why powder diffraction should not be employed to solve structures of small proteins. Indeed, recent work has shown that the high-quality powder diffraction data can be used in the study of protein crystal structures. We report the solution, model building, and refinement of a 67-residue protein domain crystal structure, with a cell volume of 64 879 A3, from powder diffraction. The second SH3 domain of ponsin, a protein of high biological significance due to its role in cellular processes, is determined and refined to resolution limits comparable to single-crystal techniques. Our results demonstrate the power and future applicability of the powder technique in structural biology.     

Distinguishing Linear from Star‐Branched Polystyrene Solutions with Fourier‐Transform Rheology

Summary: Fourier‐Transform rheology (FT rheology) was used to study the influence of the degree of branching on the nonlinear relaxation behaviour of polystyrene solutions. The results were compared with those obtained under oscillatory shear and step‐shear conditions. The different topologies could be distinguished using FT rheology where the other rheological measurements failed. Significant differences occurred under large amplitude oscillatory shear (LAOS) conditions as particularly reflected in the phase difference of the third harmonic, Φ₃, which could be related to strain‐softening and strain‐hardening behaviour. Currently, this work is extended towards different topologies in polyolefins (e.g. long chain branched).

Phase difference Φ₃ as a function of the Deborah number De at γ₀ = 2 for the polystyrene solutions measured at temperatures from 295 to 350.5 K.     

Block copolymers with Zwitterionic groups at specific sites: Synthesis and aggregation behavior in dilute solutions

Well‐defined linear diblock and triblock copolymers of styrene and isoprene, nearly symmetric in composition, with one or two sulfobetaine associogenic groups at the ends of the polymer chain or the junction points between blocks, were synthesized by anionic polymerization high‐vacuum techniques. The synthetic strategy used the combined initiation of polymerization with 3‐dimethylaminopropyllithium, living end‐capping with 1‐(4‐dimethylaminophenyl)‐1‐phenylethylene, and postpolymerization reaction with cyclopropanesultone. The association behavior of these macromolecules in dilute solutions in the nonpolar solvent CCl₄, good for both blocks, was studied by a number of methods, including static and dynamic light scattering and viscometry. The number and position of the associogenic groups dramatically influenced the association behavior of these model block copolymers. The end‐functionalized samples formed larger aggregates than the junction‐point‐functionalized ones. The difference was attributed to stronger excluded volume effects when the zwitterion group was located within the chain than when the group was at the chain end(s). © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 3791–3801, 2000     

A kinetic study of the formation of polystyrene stars using 1,2-bis(trichlorosilyl)ethane

The kinetics of formation of a chlorosilane-linked polystyrene six-arm star is reported. The precursor arm material (M_n = 88,000) was made using anionic polymerization in benzene. Prior to addition to the 1,2-bis(trichlorosilyl) ethane linking agent, the anions were endcapped with about five units of isoprene. Size exclusion chromatography using multiangle laser light scattering and viscosity detectors was utilized for characterization. This technique has allowed the molecular weights, radii of gyration, and intrinsic viscosities to be measured for star components in aliquots taken from the reactor at various times. It was found that four-arm star is formed within 30 min after the addition of the chlorosilane linking agent. There is a linear relationship between the logarithm of molecular weight of the star samples and logarithm of time of the reaction after the formation of the four-arm star. © 1997 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys, 35: 587–594, 1997     

Crystallization and Physical Ageing of Poly (2-vinyl pyridine)-b-poly(ethylene oxide) Diblock Copolymers

Summary: A set of melt miscible Poly(2-vinyl pyridine)-b-Poly(ethylene oxide) (P2VP-b-PEO) block copolymers of different compositions were studied. Transmission electron microscopy shows phase separation in the materials during the crystallization process of the PEO block as crystalline lamellae are observed for all compositions evaluated. The isothermal crystallization kinetics of PEO is progressively retarded as the P2VP content in the copolymer increases, since P2VP hinders molecular mobility in the miscible amorphous phase. Polarized light optical microscopy demonstrated that the glassy P2VP block has a negative effect on the secondary nucleation of the PEO. Finally, physical ageing experiments performed in the glassy state of the amorphous mixed phase, at different ageing times, demonstrated that a nucleating effect can be induced in the glassy state as a consequence of the reorganization of the amorphous regions. This nucleating effect significantly alters the cold crystallization rate upon subsequent heating above the glass transition temperature.     

Nitrogen-doped multi-walled carbon nanotubes for paracetamol sensing

A novel sensor consisting of nitrogen-doped multi-walled carbon nanotubes was fabricated by means of chemical vapor deposition technique with decomposition of acetonitrile onto oxidized silicon wafer using ferrocene as catalyst. The electrochemical response of carbon nanotubes-based sensor towards oxidation of paracetamol to N-acetyl-p-quinone imine was investigated in phosphate buffer solution (pH 7.0) by means of standard electrochemical techniques. A quasi-reversible response for oxidation of paracetamol was identified on carbon nanotubes-based sensor with detection limit and sensitivity of 0.485 μM and 0.8406 A M^?1 cm^?2, respectively. It was found that the nitrogen doping in carbon nanotubes enhances the sensor's detection ability. Namely, electrochemical studies performed on film consisting of pristine carbon nanotubes reveal as well quasi-reversible response towards oxidation of paracetamol but nevertheless poorer detection ability and sensitivity (0.950 μM; 0.601 A M^?1 cm^?2). The findings strongly suggest the application of nitrogen-doped carbon nanotubes in biosensing.     

Anion recognition by functionalized single wall carbon nanotubes

Amidoferrocenyl-functionalised single wall carbon nanotubes (Fc-SWNT) are efficient exoreceptors for the redox recognition of H2PO4-.     

A New Approach for the Photosynthetic Antenna–Reaction Center Complex with a Model Organized Around an s‐Triazine Linker

Two new artificial mimics of the photosynthetic antenna‐reaction center complex have been designed and synthesized (BDP‐H₂P‐C₆₀ and BDP‐ZnP‐C₆₀). The resulting electron‐donor/acceptor conjugates contain a porphyrin (either in its free‐base form (H₂P) or as Zn‐metalated complex (ZnP)), a boron dipyrrin (BDP), and a fulleropyrrolidine possessing, as substituent of the pyrrolidine nitrogen, an ethylene glycol chain terminating in an amino group C₆₀‐X‐NH₂ (X=spacer). In both cases, the three different components were connected by s‐triazine through stepwise substitution reactions of cyanuric chloride. In addition to the facile synthesis, the star‐type arrangement of the three photo‐ and redox‐active components around the central s‐triazine unit permits direct interaction between one another, in contrast to reported examples in which the three components are arranged in a linear fashion. The energy‐ and electron‐transfer properties of the resulting electron‐donor/acceptor conjugates were investigated by using UV/Vis absorption and emission spectroscopy, cyclic voltammetry, and femtosecond transient absorption spectroscopy. Comparison of the absorption spectra and cyclic voltammograms of BDP‐H₂P‐C₆₀ and BDP‐ZnP‐C₆₀ with those of BDP‐H₂P, BDP‐ZnP and BDP‐C₆₀, which were used as references, showed that the spectroscopic and electrochemical properties of the individual constituents are basically retained, although some appreciable shifts in terms of absorption indicate some interactions in the ground state. Fluorescence lifetime measurements and transient absorption experiments helped to elucidate the antenna function of BDP, which upon selective excitation undergoes a rapid and efficient energy transfer from BDP to H₂P or ZnP. This is then followed by an electron transfer to C₆₀, yielding the formation of the singlet charge‐separated states, namely BDP‐H₂P ^.+‐ C₆₀ ^.? and BDP‐ZnP ^.+‐ C₆₀ ^{. ?}. As such, the sequence of energy transfer and electron transfer in the present models mimics the events of natural photosynthesis.     

Iodine-transfer polymerization and CuAAC “click” chemistry: A versatile approach toward poly(vinylidene fluoride)-based amphiphilic triblock terpolymers

This study presents the synthesis and properties of linear PVDF-based amphiphilic triblock terpolymers with PS and PEO, [PVDF-b-PS-b-PEO], by adopting a procedure that involves: (a) iodine-transfer polymerization (ITP) of VDF with 1-iodoperfluorohexane (C₆F₁₃I) serving as chain-transfer agent (CTA) to afford C₆F₁₃-PVDF-I, (b) ITP of styrene with the C₆F₁₃-PVDF-I macromolecular-CTA to obtain C₆F₁₃-PVDF-b-PS-I diblock copolymer, (c) end-group exchange from iodo- to azido-group by nucleophilic substitution reaction with NaN_3, and (d) copper-catalyzed azide-alkyne cycloaddition (CuAAC) with alkyne-terminated PEO to achieve C₆F₁₃-PVDF-b-PS-b-PEO triblock terpolymers. The ¹H and ¹⁹F NMR spectroscopy confirmed the presence of all blocks, while gel permeation chromatography traces showed the living nature of ITP technique. The self-assembly of these terpolymers was investigated in films (atomic force microscopy and DSC), as well as in aqueous and organic solvents (DLS). The analysis of crystalline phases based on the FTIR spectroscopy indicated the conversion of PVDF α-phase into α + β-phases and β + γ-phases upon the incorporation of PS and PEO blocks, respectively. The synthesized amphiphilic copolymers were evaluated (fluorescence spectroscopy) as carriers of small hydrophobic molecules in water. © 2019 Wiley Periodicals, Inc. J. Polym. Sci. 2020 , 58, 163–171