Angucyclines: Biosynthesis, mode-of-action, new natural products, and synthesis

Covering: 1997 to 2010. The angucycline group is the largest group of type II PKS-engineered natural products, rich in biological activities and chemical scaffolds. This stimulated synthetic creativity and biosynthetic inquisitiveness. The synthetic studies used five different strategies, involving Diels-Alder reactions, nucleophilic additions, electrophilic additions, transition-metal mediated cross-couplings and intramolecular cyclizations to generate the angucycline frames. Biosynthetic studies were particularly intriguing when unusual framework rearrangements by post-PKS tailoring oxidoreductases occurred, or when unusual glycosylation reactions were involved in decorating the benz[a]anthracene-derived cores. This review follows our previous reviews, which were published in 1992 and 1997, and covers new angucycline group antibiotics published between 1997 and 2010. However, in contrast to the previous reviews, the main focus of this article is on new synthetic approaches and biosynthetic investigations, most of which were published between 1997 and 2010, but go beyond, e.g. for some biosyntheses all the way back to the 1980s, to provide the necessary context of information.     

Simultaneous quantification of centchroman and its 7-demethylated metabolite in rat dried blood spot samples using LC-MS/MS

An approach has been developed for the quantitative determination of concentrations of centchroman ( I), a nonsteroidal once‐a‐week oral contraceptive, and its major metabolite (7‐desmethyl centchroman, II) using dried blood spots (DBS) on paper, rather than conventional plasma samples. The assay employed simple solvent extraction of the DBS sample circle (6 mm) requiring small blood volumes (30 μL) followed by reversed‐phase HPLC separation, combined with multiple reaction monitoring mass spectrometric detection. The calibration plot in matrix using d ‐trans‐hydroxy chroman as internal standard (IS) was linear (r² = 0.998) over ranges of 1.5–240 and 4.5–720 ng/mL for I and II, respectively. The recoveries of both I and II were always >60% with quantification limits (signal‐to‐noise ratio = 10) of 1.5 and 4.5 ng/mL for I and II, respectively. The intra‐day and inter‐day precision (%RSD) and accuracy (%bias) variations in blood spots for both I and II were better than 13%. Moreover, both I and II were stable in DBS for at least 3 months when stored at room temperature. The developed method was successfully applied to the pharmacokinetic interaction study after oral administration of centchroman with and without co‐administration of carbamazepine in female Sprague–Dawley rats using serial sampling and results were comparable with the plasma concentrations reported earlier. Copyright © 2011 John Wiley & Sons, Ltd.     

C?H/π‐Interaction‐Guided Self‐Assembly in π‐Conjugated Oligomers

We report CH/π hydrogen‐bond‐driven self‐assembly in π‐conjugated skeletons based on oligophenylenevinylenes (OPVs) and trace the origin of interactions at the molecular level by using single‐crystal structures. OPVs were designed with appropriate pendants in the aromatic core and varied by hydrocarbon or fluorocarbon tails along the molecular axis. The roles of aromatic π‐stack, van der Waals forces, fluorophobic effect and CH/π interactions were investigated on the theromotropic liquid crystallinity of OPV molecules. Single‐crystal structures of hydrocarbon OPVs provided direct evidence for the existence of CH/π interactions between the π‐ring (H‐bond acceptor) and alkyl C? H (H‐bond donor). The four important crystallographic parameters, d_c?x=3.79 Å, θ=21.49°, φ=150.25° and d_Hp?x=0.73 Å, matched in accordance with typical CH/π interactions. The CH/π interactions facilitate the close‐packing of mesogens in x–y planes, which were further protruded along the c axis producing a lamellar structure. In the absence of CH/π interactions, van der Waals interactions drove the assembly towards a Schlieren nematic texture. Fluorocarbon OPVs exhibited smectic liquid‐crystalline textures that further underwent Smectic A (SmA) to Smectic C (SmC) phase transitions with shrinkage up to 11 %. The orientation and translational ordering of mesogens in the liquid‐crystalline (LC) phases induced H‐ and J‐type molecular arrangements in fluorocarbon and hydrocarbon OPVs, respectively. Upon photoexcitation, the H‐ and J‐type molecular arrangements were found to emit a blue or yellowish/green colour. Time‐resolved fluorescence decay measurements confirmed longer lifetimes for H‐type smectic OPVs relative to that of loosely packed one‐dimensional nematic hydrocarbon‐tailed OPVs.     

Synthesis and Antiinflammatoryand Anticancer Activity Evaluation of Some Condensed Pyrimidines

Summary.  Upon condensation with 4-isothiocyanato-4-methyl-2-pentanone, 2,3-diaminonaphthalene and N-aminoethyladenosine gave in good yields substituted pyrimidonaphthoimidazole and imidazopyrimidine thione. Refluxing pyrimidobenzthiazole with methanol H₂SO₄ at pH∼1 resulted in S-methyl pyrimidobenzthiazole in moderate yield. Pyrimidobenzimidazole derivatives could be reacted to S-alkylated and N-acylated derivatives by refluxing with ethyl bromoacetate in the presence of anhydrous potassium carbonate in THF and by heating in an acetic acid/acetic anhydride mixture. Heating of pyrimidobenzimidazole with 75% aqueous H₂SO₄ on a water bath ended up in a rearranged product. All compounds gave correct ¹H NMR, IR, and HR mass spectra. Results of antiinflammatory, analgesic, and anticancer activity screening of the new compounds are described. Received October 29, 1999. Accepted (revised) January 13, 2000     

On Wachspress pentagonal patches

Wachspress quadrilateral patches have been recently studied from the point of view of applications to surface modelling in CAGD [1], [3], [4]. Some more applications for defining barycentric coordinates for arbitrary polygons have also been presented in [5] [9]. The purpose of the present paper is to introduce non-negative Wachspress rational basis functions for surface modelling on pentagonal partitions. Interpolation formula for function values and directional derivatives at the vertices of pentagon has been presented. Conditions for C¹– continuity of the composite surface have also been studied in the paper. (© 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Temperature Dependence of the Back-Stress in Shear for Glassy Polycarbonate

Summary: Back-stress is the equilibrium stress and represents conditions under which relaxation events in the material stop and the material can carry an applied load indefinitely without a change in strain. In most models for glassy polymers, back-stress plays a central role since relaxation in materials is closely related to the distance of the current conditions from equilibrium. A number of these models that are commonly used for modeling glassy polymers use a modeling structure similar to large deformation plasticity. The flow rule for the plastic strain in these models are directly connected to the “over-stress,” a properly invariant difference between the stress and the back-stress. The importance of correctly evaluating the back-stress to use in these models is clear. For this class of models, the authors have recently developed a method for directly calculating the back-stress under shear deformations. This method is based on evaluating the slope of the stress-strain response under conditions of similar elastic and plastic strain, but different strain rates. Since plastic flow goes to zero at equilibrium, the back-stress can be found by locating points of zero plastic strain rate. Using the proposed method, the back-stress in glassy polycarbonate has been evaluated under shear in isothermal tests going from room temperature to 120 °C, just below the glass transition temperature for polycarbonate. The proposed method provided a full map of the back-stress for polycarbonate over a large range of shear strain and temperature.     

Bayesian latent variable regression via Gibbs sampling: methodology and practical aspects

Bayesian latent variable regression (BLVR) aims to utilize all available information for empirical modeling via a Bayesian framework. Such information includes prior knowledge about the underlying variables, model parameters and measurement error distributions. This paper improves upon the existing optimization‐based BLVR (BLVR‐OPT) method [1] by developing a sampling‐based Bayesian latent variable regression (BLVR‐S) method that relies on Gibbs sampling. Use of the sampling‐based framework not only provides point estimates, but its ability to generate samples that represent the posterior distribution of the unknown variables, also readily provides error bounds. Features and advantages of this method are demonstrated via examples based on simulated data and real Near‐Infrared (NIR) spectroscopy data. Practical aspects of Bayesian modeling such as determining when the extra computation may be worth the effort are addressed by an empirical study of the effects of the amount of training data and signal to noise ratio (SNR). The benefits of BLVR seem to be most significant when the number of measurements is limited and when noise in output variables is relatively large. Copyright © 2007 John Wiley & Sons, Ltd.     

Spectroscopic assessment of biomolecular changes in Helicobacter pylori and Epstein–Barr virus co-infected gastric epithelial cells

Helicobacter pylori and Epstein–Barr Virus (EBV) are Group 1 carcinogens that can enhance gastric cancer progression. Bioactive substances extracted from plants can be effective therapeutic agents in cancer treatment. For example, Withania somnifera extract-WSE reduces the Gankyrin oncoprotein, which is upregulated in the presence of H. pylori and EBV. The various biochemical and metabolic changes upon 24 hrs post-infection followed by W. somnifera extract (WSE) treatment on gastric epithelial cells (AGS) can be studied using spectroscopic techniques. In the biomedical sciences, Raman and NMR spectroscopy have been extensively employed to interpret cellular alterations contributing to the onset of infection and the severity of gastric cancer. More specifically, alterations in cellular biochemical homeostasis are linked to the moieties of cholesterol, collagen, choline, carbohydrate, lipids, tyrosine, and phenylalanine. Further, we have found significantly elevated FWHM for carbohydrates, tumor associated protein, collagen, cholesterol, and cholesterol ester in the co-infection model. We also looked into the potential correlation between these molecules using molecular network analysis and found several related factors that can be modulated through biomolecular levels. These molecules are crucial in several physiological functions, including cell division, cell proliferation, apoptosis, necrosis, cell migration, and lipid transport. Our study paves the pathway to study H. pylori and EBV co-infection in human gastric epithelial cells and the therapeutic interventions of WSE in this scenario and highlights specific biomolecular alterations, which can be focused for further mechanistic investigations.     

Improvement on Quantum Teleportation of Three and Four Qubit States Using Multi-Qubit Cluster States

International Journal of Theoretical Physics - In 2016, Li et al. [Int. J. Theor. Phys. 55, 1820–1823 (2016)] proposed schemes for quantum teleportation of certain class of three and four...