Of the ortho effect in palladium/norbornene-catalyzed reactions: a theoretical investigation

Mechanistic questions concerning palladium and norbornene catalyzed aryl-aryl coupling reactions are treated in this paper: how aryl halides react with the intermediate palladacycles, formed by interaction of the two catalysts with an aryl halide, and what is the rational explanation of the "ortho effect" (caused by an ortho substituent in the starting aryl halide), which leads to aryl-aryl coupling with a second molecule of aryl halide rather than to aryl-norbornyl coupling. Two possible pathways have been proposed, one involving aryl halide oxidative addition to the palladacycle, the other passing through a palladium(II) transmetalation, also involving the palladacycle, as previously proposed by Cardenas and Echavarren. Our DFT calculations using M06 show that, in palladium-catalyzed reaction of aryl halides, not containing ortho substituents, and norbornene, the intermediate palladacycle formed has a good probability to undergo transmetalation, energetically favored over the oxidative addition leading to Pd(IV). The unselective sp(2)-sp(2) and sp(2)-sp(3) coupling, experimentally observed in this case, can be explained in the framework of the transmetalation pathway since the energetic difference between aryl attack onto the aryl or norbornyl carbon of the palladacycle intermediate is quite small. On the other hand, according to the experimentally observed "ortho effect", selective aryl-aryl coupling only occurs in the reactions of ortho-substituted metallacycles. The present work offers the first possible rationalization of this finding. These in situ formed palladacycles containing an ortho substituent could more easily undergo oxidative addition of an aryl halide rather than reductive elimination from the transmetalation intermediate as a result of a steric clash in the transition state of the latter. The now energetically accessible Pd(IV) intermediate, featuring a Y-distorted trigonal bipyramidal structure, can account for the reported selective aryl-aryl coupling through a reductive elimination which is easier than aryl-norbornyl coupling. Thus, the steric effect represents the main factor that dictates the energetic convenience of the system to follow the Pd(IV) or the transmetalation pathway. Ortho substituents cause a higher energy transition state for reductive elimination from the transmetalation intermediate than for oxidative addition to the metallacycle palladium(II) and the pathway based on the latter predominates.     

On the route to mimic natural movements: synthesis and photophysical properties of a molecular arachnoid

The synthesis, photoswitchability and NIR emitting properties of a novel π-extended pyrene derivative, peripherally decorated with four azobenzenyl-ethynyl legs, are reported.     

Near-infrared spectroscopy of LiNH3: first observation of the electronic spectrum

Electronic spectra of LiNH(3) and its partially and fully deuterated analogues are reported for the first time. The spectra have been recorded in the near-infrared and are consistent with two electronic transitions in close proximity, the ?(2)E-X(2)A(1) and B(2)A(1)-X(2)A(1) systems. Vibrational structure is seen in both systems, with the Li-N-H bending vibration (ν(6)) dominant in the ?(2)E-X(2)A(1) system and the Li-N stretch (ν(3)) in the B(2)A(1)-X(2)A(1) system. The prominence of the 6(0)(1) band in the ?(2)E-X(2)A(1) spectrum is attributed to Herzberg-Teller coupling. The proximity of the B(2)A(1) state, which lies a little more than 200 cm(-1) above the ?(2)E state, is likely to be the primary contributor to this strong vibronic coupling.     

Oligoporphyrin Arrays Conjugated to [60]Fullerene: Preparation,NMR Analysis,and Photophysical and Electrochemical Properties

We report the synthesis and physical properties of novel fullerene–oligoporphyrin dyads. In these systems, the C‐spheres are singly linked to the terminal tetrapyrrolic macrocycles of rod‐like meso,meso‐linked or triply‐linked oligoporphyrin arrays. Monofullerene–mono(Zn^II porphyrin) conjugate 3 was synthesized to establish a general protocol for the preparation of the target molecules (Scheme 1). The synthesis of the meso,meso‐linked oligopophyrin–bisfullerene conjugates 4 – 6 , extending in size up to 4.1 nm ( 6 ), was accomplished by functionalization (iodination followed by Suzuki cross‐coupling) of the two free meso‐positions in oligomers 21 – 23 (Schemes 2 and 3). The attractive interactions between a fullerene and a Zn^II porphyrin chromophore in these dyads was quantified as ΔG=−3.3 kcal mol⁻¹ by variable‐temperature (VT) ¹H‐NMR spectroscopy (Table 1). As a result of this interaction, the C‐spheres adopt a close tangential orientation relative to the plane of the adjacent porphyrin nucleus, as was unambiguously established by ¹H‐ and ¹³C‐NMR (Figs. 9 and 10), and UV/VIS spectroscopy (Figs. 13–15). The synthesis of triply‐linked diporphyrin–bis[60]fullerene conjugate 8 was accomplished by Bingel cyclopropanation of bis‐malonate 45 with two C₆₀ molecules (Scheme 5). Contrary to the meso,meso‐linked systems 4 – 6 , only a weak chromophoric interaction was observed for 8 by UV/VIS spectroscopy (Fig. 16 and Table 2), and the ¹H‐NMR spectra did not provide any evidence for distinct orientational preferences of the C‐spheres. Comprehensive steady‐state and time‐resolved UV/VIS absorption and emission studies demonstrated that the photophysical properties of 8 differ completely from those of 4 – 6 and the many other known porphyrin–fullerene dyads: photoexcitation of the methano[60]fullerene moieties results in quantitative sensitization of the lowest singlet level of the porphyrin tape, which is low‐lying and very short lived. The meso,meso‐linked oligoporphyrins exhibit ¹O₂ sensitization capability, whereas the triply‐fused systems are unable to sensitize the formation of ¹O₂ because of the low energy content of their lowest excited states (Fig. 18). Electrochemical investigations (Table 3, and Figs. 19 and 20) revealed that all oligoporphyrin arrays, with or without appended methano[60]fullerene moieties, have an exceptional multicharge storage capacity due to the large number of electrons that can be reversibly exchanged. Some of the Zn^II porphyrins prepared in this study form infinite, one‐dimensional supramolecular networks in the solid state, in which the macrocycles interact with each other either through H‐bonding or metal ion coordination (Figs. 6 and 7).     

Separation of biomolecules by μ-high-performance anion-exchange chromatography using a tentacle-like stationary phase

A variety of biomolecules and their variants, which have previously been problematic to separate, have been analysed using a novel anion-exchange resin based on a non-porous polystyrene polymeric support with a hydrophilic coating and grafted tentacular quaternary ammonium functional groups. The hydrophilic coating results in minimal interaction between the support and the biomolecule, while the highly flexible tentacular-like anion-exchange groups increase the ionic interaction potential and act as an umbrella to hold the proteins away from the surface. Because of the removal of silanophilic interactions, minimisation of hydrophobic interactions, and the highly flexible nature of the tentacle-like ion exchangers, ionic interactions can therefore dominate the separation. As such this phase is highly suited to the separation of highly charged biomolecules and their variants. This polymeric strong anion-exchange (SAX) support was packed into a fused-silica capillary column and, using a salt concentration gradient, various recombinant proteins were analysed by -HPLC resulting in baseline resolution.Awarded a poster prize on the occasion of the Euranalysis XIII conference, Salamanca, Spain, 5–10 September 2004     

Sensitivity improvement in 19F NMR-based screening experiments: theoretical considerations and experimental applications

NMR-based binding and functional screening performed with FAXS (fluorine chemical shift anisotropy and exchange for screening) and 3-FABS (three fluorine atoms for biochemical screening) represents a potential alternative approach to high-throughput screening for the identification of novel potential drug candidates. The major limitation of this method in its current status is its intrinsic low sensitivity that limits the number of tested compounds. One approach for overcoming this problem is the use of a cryogenically cooled (19)F probe that reduces the thermal noise in the receiver circuitry. Sensitivity improvement in the two screening techniques achieved with the novel cryogenic (19)F probe technology permits an increased throughput, detection of weaker binders and inhibitors (relevant in a fragment-based lead discovery program), detection of slow binders, and reduction in protein and substrate consumption. These aspects are analyzed with theoretical simulations and experimental quantitative performance evaluation. Application of 3-FABS combined with the cryogenic (19)F probe technology to rapid screening at very low enzyme concentrations and the current detection limits reached with this approach are also presented.     

NMR and EPR structural delineation of copper(II) complexes formed by kanamycin A in water

The complexes formed by kanamycin A at three different pH values (5.5, 7.4 and 12.0) were investigated by NMR and EPR spectroscopy. Paramagnetic relaxation contributions to proton relaxation rates were measured using a combination of the TOCSY sequence with the inversion recovery experiment in order to gain signal resolution in the bulk region. Measured contributions were converted into distances and used for structural determination by restrained simulated annealing where all possible chair and boat conformations of the rings were taken into account. The interaction of the Cu(II) ion with the nitrogen of the C ring is apparent at all pH values. At higher pH also the amino group of ring A starts to be involved in the metal coordination sphere. This is accompanied by a switch in conformation of ring C. Structures are consistent with the involvement in the coordination sphere either of the 2' or 4' hydroxyl oxygens at pH 5.5 and the 5 and the 6' hydroxyl oxygens (or the ring oxygen) at pH 12.0.