Temperature dependence of protein backbone motion from carbonyl 13C and amide 15N NMR relaxation

The NMR spin-lattice relaxation rate (R1) and the rotating-frame spin-lattice relaxation rate (R1rho) of amide 15N and carbonyl 13C (13C') of the uniformly 13C- and 15N-labeled ubiquitin were measured at different temperatures and field strengths to investigate the temperature dependence of overall rotational diffusion and local backbone motion. Correlation between the order parameter of the N-H vector, SNH2, and that of the carbonyl carbon, S2C', was investigated. The effective S2C' was estimated from the direct fit of the experimental relaxation rates and from the slope of 2R2-R1 vs. B2 using Lipari-Szabo formalism. The average SNH2 decreased by 5.9%, while the average S2C' decreased by 4.6% from 15 to 47 degrees C. At the extreme low and high temperatures the difference in the temperature dependence of the order parameters vanishes. At the intermediate temperatures they do not change by the same amount but they follow the same trend. On the same peptide plane along the protein sequence, S2C' and SNH2 are highly correlated. The results suggest that fast local motion experienced at the site of the N-H vector and carbonyl nucleus is more complicated than previously thought and it cannot be easily described by one single type of motion in a broad range of temperature.     

A theoretical study of special acoustic effects caused by the staircase of the El Castillo pyramid at the Maya ruins of Chichen-Itza in Mexico

It is known that a handclap in front of the stairs of the great pyramid of Chichen Itza produces a chirp echo which sounds more or less like the sound of a Quetzal bird. The present work describes precise diffraction simulations and attempts to answer the critical question what physical effects cause the formation of the chirp echo. Comparison is made with experimental results obtained from David Lubman. Numerical simulations show that the echo shows a strong dependence on the kind of incident sound. Simulations are performed for a (delta function like) pulse and also for a real handclap. The effect of reflections on the ground in front of the pyramid is also discussed. The present work also explains why an observer seated on the lowest step of the pyramid hears the sound of raindrops falling in a water filled bucket instead of footstep sounds when people, situated higher up the pyramid, climb the stairs.     

The representation of 3D gaussian beams by means of inhomogeneous waves

There are different methods to mathematically represent a bounded beam. Perhaps the most famous method is the classical Fourier method that consists of the superposition of pure homogeneous plane waves all traveling in different directions and having an amplitude that can be found by the Fourier transform of the required profile. This method works perfectly for 2D as well as for 3D bounded beams. However, some researchers prefer the inhomogeneous wave theory to represent a bounded beam because some phenomena, e.g. the Schoch effect, are explained by this method by means of concepts that agree better with intuition. There are several papers dealing with this method for 2D gaussian beams. Until now, it has never been considered possible to represent 3D gaussian beams as well. The present paper shows a method to overcome this shortcoming and presents different sorts of 3D gaussian beams that are built up by means of inhomogeneous plane waves.     

A combined time-resolved and stereospecific deuterium labelling study of the elimination of methanol from the molecular ion of methoxycyclohexane

It is shown by field ionization kinetics in combination with both site-specific and stereospecific D-labelling that the loss of a molecule of methanol from the molecular ion of methoxycyclohexane can occur via 1,4- and 1,3-eliminations. The 1,4-elimination predominates at molecular ion lifetimes of ≥10^?10.1 s. It is found that ～19% of this reaction channel corresponds to a stereospecific cis-elimination, whereas the remaining 81% is only site-specific. At molecular ion lifetimes of between 10^?10 and 10^?9 s, a very sudden increase of the 1,3-elimination is observed at the expense of the 1,4-elimination. A stereospecific loss of methanol, however, is not observed at all for the 1,3-elimination within the limits of error. Possible intermediates and reaction pathways, which can account for the observations made, are discussed.     

Mixed parallel processors with interdependent blocking

This paper studies a system of parallel service facilities or processors with mixed exponential and non-exponential queues, a non-exponential finite source input and interdependent arrival as well as departure blocking such as due to a common pool or shared resource. A concrete invariance condition upon the blocking protocol is provided. Under this condition the stationary busy source distribution is shown to be of an insensitive product form. The result unifies and extends known product form results as will be illustrated by several examples.     

Effects of Ultraviolet A-1 Radiation on Calcineurin Activity and Cytokine Production in (Skin) Cell Cultures†

Calcineurin (Cn) is the target of immunosuppressive drugs used for maintenance therapy of transplant patients. UV radiation is also known to be immunosuppressive and, like the Cn inhibitors, UV has been shown to positively influence various inflammatory skin diseases. Recently, Cn activity has been demonstrated in skin and skin cell cultures. In the present study we have investigated the effects of UV(A-1) irradiation on Cn activity in skin. In total skin we found a significant reduction in Cn activity after exposure to 450 kJ m⁻² of UVA-1 (340–400 nm). In repeated experiments cultures of fibroblasts and keratinocytes also showed dose-dependent and selective reduction in Cn activity after UVA-1 irradiation. UVB irradiation caused a decrease in the Cn activity of one of two fibroblast cultures and was ineffective in keratinocytes. In Jurkat cells and PBMC UVA-1 reduced Cn activity and also the production of cytokines such as interleukin (IL)-2, γ-interferon, IL-4 and IL-10 that are controlled by the Ca²⁺–Cn pathway. These results indicate that UV(A-1) irradiation may lead to inactivation of Cn in the skin and thus suppress the skin immune system in a similar fashion to the Cn inhibitors.     

Imaging of Self‐Assembled Structures: Interpretation of TEM and Cryo‐TEM Images

The investigation of solution‐borne nanostructures by transmission electron microscopy (TEM) is a frequently used analytical method in materials chemistry. In many cases, the preparation of the TEM sample involves drying and staining steps, and the collection of images leads to the interaction of the specimen with the electron beam. Both aspects call for cautious interpretation of the resulting electron micrographs. Alternatively, a near‐native solvated state can be preserved by cryogenic vitrification and subsequent imaging by low‐dose cryogenic TEM. In this Minireview, we provide a critical analysis of sample preparation, and more importantly, of the acquisition and interpretation of electron micrographs. This overview should provide a framework for the application of (cryo)‐TEM as a powerful and reliable tool for the analysis of colloidal and self‐assembled structures with nanoscopic dimensions.     

"Compression-only" behavior: a second-order nonlinear response of ultrasound contrast agent microbubbles

Oscillating phospholipid-coated ultrasound contrast agent microbubbles display a so-called "compression-only" behavior, where it is observed that the bubbles compress efficiently while their expansion is suppressed. Here, a theoretical understanding of the source of this nonlinear behavior is provided through a weakly nonlinear analysis of the shell buckling model proposed by Marmottant et al. [J. Acoust. Soc. Am. 118, 3499-3505 (2005)]. It is shown that the radial dynamics of the bubble can be considered as a superposition of a linear response at the fundamental driving frequency and a second-order nonlinear low-frequency response that describes the negative offset of the mean bubble radius. The analytical solution deduced from the weakly nonlinear analysis shows that the compression-only behavior results from a rapid change of the shell elasticity with bubble radius. In addition, the radial dynamics of single phospholipid-coated microbubbles was recorded as a function of both the amplitude and the frequency of the driving pressure pulse. The comparison between the experimental data and the theory shows that the magnitude of compression-only behavior is mainly determined by the initial phospholipids concentration on the bubble surface, which slightly varies from bubble to bubble.