1H and 13C NMR characterization of hemiamidal isoniazid-NAD(H) adducts as possible inhibitors of InhA reductase of Mycobacterium tuberculosis

Isoniazid (INH) is easily oxidized with manganese(III) pyrophosphate, a chemical model of the KatG protein involved in activation of INH inside the bacteria Mycobacterium tuberculosis. Performed in the presence of NAD(+), this oxidation generates a family of isomeric INH-NAD(H) adducts, which have been shown to be effective inhibitors of InhA, an enzyme essential in mycolic acid biosynthesis. In this work, we fully characterized by (1)H and (13)C NMR spectroscopy four main species of INH-NAD(H) adducts that coexist in solution. Two of them are open diastereoisomers consisting of the covalent attachment of the isonicotinoyl radical at position four of the nicotinamide coenzyme. The other two result from a cyclization involving the amide group from the nicotinamide and the carbonyl group from the isonicotinoyl radical to give diastereoisomeric hemiamidals. Although an INH-NAD(H) adduct with a 4S configuration has been characterized within the active site of InhA from Xray crystallography and this bound adduct interpreted as an open form (Rozwarski et al., Science 1998, 279, 98-102), it is legitimate to raise the question about the effective active form(s), open or cyclic, of INH-NAD(H) adduct(s). Is there a single active form or are several forms able to inhibit the InhA activity with different levels of inhibitory potency?     

Synthesis of coumarins by ring-closing metathesis using Grubbs’ catalyst

A novel generally applicable synthesis of coumarins from phenolic substrates utilizing ring-closing metathesis is described. This sequence involves O-allylation of phenols followed by ortho-Claisen rearrangement, subsequent based-induced isomerization affording 2-(1-propenyl)phenols, acylation with acryloyl chloride, and finally ring-closing metathesis (RCM) with Grubbs’ second generation catalyst.     

Kinetics of the thermal unimolecular decomposition of hex-1-ene-3-yne. Heat of formation and resonance stabilization energy of the 3-ethenylpropargyl radical

The thermal unimolecular decomposition of hex-1-ene-3-yne (HEY) has been investigated over the temperature range 949–1230 K using the technique of very low-pressure pyrolysis (VLPP). One reaction pathway is the expected C₅? C₆ bond fission to form the resonance-stabilized 3-ethenylpropargyl radical. There is a concurrent process producing molecular hydrogen which probably occurs via the intermediate formation of hexatrienes and cyclohexa-1,3-diene. RRKM calculations yield the extrapolated high-pressure rate parameters at 1100 K given by the expressions 10^16.0±0.3 exp(?300.4 ± 12.6 kJ mol^?1/RT) s^?1 for bond fission and 10^13.2+0.4 exp(?247.7 ± 8.4 kJ mol^?1/RT) for the overall formation of hydrogen. The A factors were assigned from the results of previous studies of related alkynes, alkenes, and alkadienes. The activation energy for the bond fission reaction leads to ΔH [H₂CCHCC?H₂] = 391.9, DH [H₂CCHCCCH₂? H] = 363.3, and a resonance stabilization energy of 56.9 ± 14.0 kJ mol^?1 for the 3-ethenylpropargyl radical, based on a value of 420.2 kJ mol^?1 for the primary C? H bond dissociation energy in alkanes. Comparison with the revised value of 46.6 kJ mol^?1 for the resonance energy of the unsubstituted propargyl radical indicates that the ethenyl substituent (CH₂?CH) on the terminal carbon atom has only a small effect on the propargyl resonance energy. © John Wiley & Sons, Inc.     

Practical asymmetric enzymatic reduction through discovery of a dehydrogenase-compatible biphasic reaction media

[reaction: see text] An enzyme-compatible biphasic reaction media for the asymmetric biocatalytic reduction of ketones with in situ cofactor regeneration has been developed. In this biphasic reaction media, which is advantageous for reactions at higher substrate concentrations, both enzymes (alcohol dehydrogenase and FDH from Candida boidinii) remain stable. The reductions with poorly water-soluble ketones were carried out at substrate concentrations of 10-200 mM, and the optically active (S)-alcohols were formed with moderate to good conversions and with up to >99% ee.     

Synthesis of 1,1-diarylethylenes from an α-stannyl β-silylstyrene

The synthesis of a family of 1,1-diarylethylenes from an α-stannyl β-silylstyrene through a combination of a Stille coupling and a protodesilylation reaction is described. This approach avoids the problematic cine-substitution, which is a well documented side reaction during the palladium-assisted elaboration of α-substituted vinylstannanes to 1,1-disubstituted ethylenes.     

Factors controlling the regioselectivity of additions to α-enones—III: Reactions of 3-aryl α-enones with phosphorylated anions

Reaction of phosphonoester 2 and phosphononitrile 3 with chalcone and p-methoxychaleone in THF-t-BuOK at room temperature gives only the product resulting from CC double bond attack. The same reagents with benzalacetone lead to mixture of products resulting from CC double bond and carbonyl attack, though phosphine oxide 4 gives only the products of CC attack. Dypnone gives products of carbonyl attack with 3 and does not react with 2.These results are discussed in terms of perturbation theory: C₄ attack increases with delocalization of the reagent's negative charge and lowering of the α-enone LUMO level.     

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

Metabolite-sensing mRNAs, or "riboswitches," specifically interact with small ligands and direct expression of the genes involved in their metabolism. Riboswitches contain sensing "aptamer" modules, capable of ligand-induced structural changes, and downstream regions, harboring expression-controlling elements. We report the crystal structures of the add A-riboswitch and xpt G-riboswitch aptamer modules that distinguish between bound adenine and guanine with exquisite specificity and modulate expression of two different sets of genes. The riboswitches form tuning fork-like architectures, in which the prongs are held in parallel through hairpin loop interactions, and the internal bubble zippers up to form the purine binding pocket. The bound purines are held by hydrogen bonding interactions involving conserved nucleotides along their entire periphery. Recognition specificity is associated with Watson-Crick pairing of the encapsulated adenine and guanine ligands with uridine and cytosine, respectively.     

A liquid chromatography/electrospray ionization-tandem mass spectrometry method for quantification of specific organophosphorus pesticide biomarkers in human urine

Organophosphorus pesticides are commonly used in both agricultural and residential settings. The widespread use of these chemicals makes it almost impossible for humans to avoid exposure. In order to determine background human exposure, there is a need for fast, reliable, and sensitive analytical methods. We have developed a sensitive method to quantify specific biomarkers of the organophosphorus pesticides acephate, azinphos, chlorpyrifos, coumaphos, diazinon, isazofos, malathion, methamidophos, parathion and pirimiphos or their O,O-dimethyl analogues in human urine, as their selective metabolites or as the intact pesticide. Isotopically labeled internal standards were used for eight of the analytes. The use of labeled internal standards in combination with high-performance liquid chromatography electrospray ionization–tandem mass spectrometry provided a high degree of specificity. Repeated analysis of urine samples fortified with high and low concentrations of the analytes gave relative standard deviations (RSD) of less than 10% for the analytes with an isotopically labeled standard. Analytes without isotopically labeled standards had higher RSD. For all compounds except methamidophos and acephate, the recoveries were greater than 70%. The limits of quantification for most of the analytes were in the range of 0.1 to 1 ng/mL. We detected concentrations of most of these pesticides and/or their metabolites in urine samples from non-occupationally exposed persons using our method. Our frequencies of detection for the analytes measured ranged from 1% to 98%.     

Synthesis, characterization and crystal structures of two polyphilic mesogenic compounds

Three homologous series of semi-perfluorinated liquid crystals: 4-(2,2,3,3,4,4,4-heptafluoro-butyloxycarbonyl)phenyl, 4-(2,2,3,3,4,4,5,5-octafluoropentyloxycarbonyl)phenyl and 4-(3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluorooctyloxycarbonyl)phenyl 4-[(n-perfluoroalkyl)alkyloxy]benzoates have been synthesized. Their mesomorphic properties were studied by DSC, microscopic observation and X-ray diffraction. Their layer spacings are smaller than the molecular length (L). The ratio d_SA/L is about 0.7. The crystal structure of two derivatives of the first family have also been investigated. In both structures the molecules pack in smectic C-like sheets where neighbouring molecules are antiparallel, interacting through dipolar and van der Waals forces. The interactions between contiguous sheets, through the ends of perfluorinated chains are very weak. The X-ray diffraction results on the mesophases and on the crystalline structures of two compounds of the first family are compared. From this, we propose a model of the smectic phases with a zig-zag structure.