Size selected growth of nanodots: effects of growth kinetics and energetics on the formation of stationary size distributions

The size selection of nanodots during the growth is studied by using a reaction kinetic model, where reaction rates depend on the dot size. The characteristic feature of the reaction rates is the energetics, where the free energy of dots has a minimum at the certain dot size. The model equations are solved by using a particle coalescence simulation method. We find phenomenologically three distinct stages of growth. First, during the initial deposition stage, distributions with high density of small dots occur. Second, there is an intermediate and short-lived stationary state, which is controlled by kinetics of growth. Third, a long-lived stationary state is obtained, with nearly Gaussian size distributions, mostly determined by the energetics of the growth but also significantly affected by the kinetics. In the final stage, size selection and narrowing of the distributions occur. It is also shown that in the final stage of growth the Fokker-Planck type continuum model describes well the evolution of the distributions and the size selection.     

Aluminum enolates via retroaldol reaction: catalytic tandem aldol-transfer—Tischtschenko reaction of aldehydes with aldol adducts of ketones to ketones

Bidentate aluminum chelates derived from biphenol, binaphthol and catechol were found to be efficient catalysts for aldol-transfer reactions of ketone to ketone aldol adducts with aliphatic or aromatic aldehydes giving rise to the formation of aldol adducts of ketones to the aldehydes. In the presence of an excess of an aliphatic aldehyde, a catalytic tandem aldol-transfer—Tischtschenko reaction is observed. The tandem reaction produces monoesters of 1,3-diols with high anti selectivity and with modest to good chemical yield. 1,2-Unsaturated aldehydes are less reactive in the aldol-transfer reaction and require 2-4 times higher load of the catalyst to be used than aliphatic and aromatic aldehydes. Poor diastereoselectivity was observed in the formation of α-substituted aldols and 2-substituted monoesters of anti-1,3-diols indicating that the aldol-transfer reaction is not diastereoselective with the catalysts studied. The utility of the highly 1,3-anti selective formation of diolmonoesters was found to be limited by acyl migration.     

Modification of polypropylene surfaces with micropits and hierarchical micropits/nanodepressions

Micropit surfaces and hierarchically structured micropit/nanodepression surfaces were fabricated in polypropylene by injection moulding. The first step in the process was the microstructuring of aluminium foils with a micro-working robot to obtain a pattern of micropits. Dimensions of the micropits could be controlled by adjusting the working parameters of the robot. The microstructured faces of some of the foils were anodized to aluminium oxide giving a surface in which both micropits and the smooth areas between were covered with nanopores. Mould inserts for the injection moulding were obtained by cold mounting of an epoxy resin mixture on the foils. After the epoxy resin had hardened, the foils were etched away. Dimensions of the micropillars and micropillars/nanobumps on the epoxy related to the dimensions of the structures on the foils. Finally, structures were replicated in polypropylene as micropits and hierarchical micropits/nanodepressions by injection moulding. The dimensions of these hollow structures corresponded well with those of the epoxy pillars and the original micropits.Static and dynamic contact angles on the micropit-structured polypropylene surfaces were elevated from the slightly hydrophobic values of smooth polypropylene. With hierarchical micropit/nanodepression structures, the contact angles approached the superhydrophobic limit of 150°. The work demonstrates an inexpensive and reproducible technique to fabricate hollow structures of various dimensions and scales on polypropylene and modify the surface properties of the polymer.     

Automated detection of differently expressed fragments in mRNA differential display

We present a novel method for the automated detection of fragments showing dissimilar expression in mRNA differential display. The analysis is based on aligning the numerical electrophoretic lane data in respect of a given distance function defined on a set of fragments, or signal peaks in general. We presume that significant dissimilarities between peaks result in extreme score values computed for aligned peak pairs. Whereas in sequence comparison, an overall sequence similarity score is conventionally used, the current method defines a special dissimilarity score for searching the peak pairs showing the largest relative differences between the lanes. The output of the analysis is a highly reduced list of peak pairs, along with a set of associated features extracted from the lanes. Only the peaks of this list need to be visually confirmed instead of the vast amount of peaks in the original electrophoretic results. The results obtained by the algorithm correlate well with results of visual evaluation of the same electropherograms. The current algorithm may be applied to the study of complex expression patterns in multiple lanes and, in general, to automated recognition of variously defined patterns of quantitative electrophoretic data.     

Total synthesis of thiostrepton. Assembly of key building blocks and completion of the synthesis

The completion of the total synthesis of thiostrepton (1) is described. The synthesis proceeded from key building blocks 2-5, which were assembled into a growing substrate that finally led to the target molecule. Thus, the dehydropiperidine peptide core 2 was, after appropriate manipulation, coupled to the thiazoline-thiazole fragment 3, and the resulting product was advanced to intermediate 11 possessing the thiazoline-thiazole macrocycle. The bis-dehydroalanine tail equivalent 4 and the quinaldic acid fragment 5 were then sequentially incorporated, and the products so obtained were further elaborated to forge the second macrocycle of the molecule. Several roadblocks encountered along the way were systematically investigated and overcome, finally opening the way, through intermediates 20, 32, 44, 45, and 46, to the targeted natural product, 1.     

Electron impact induced fragmentation of dihydro-1,4-dithiines. 2,3-Substituted 5,6-dihydro-l,4-dithiines

In the electron impact induced fragmentation of 2,3-disubstituted 5,6-dihydro-1,4-dithiines, the most important cleavage of the heterocyclic ring occurs via the retro-Diels-Alder type of reaction. The further fragmentation of the resulting radical cation gives rise to substitutes thiocarbonyl cations. This fragmentation favours formations of ions in which the electron-deficient carbon-sulphur triple bond is stabilized by an electron-releasing group. The ring fragmentation was observed to be dependent on the nature of the 3- and 2-substituents of the ring when a series of 3- and 2-substituted 5,6-dihydro-l,4-dithiines was investigated. The fragmentation of dihydro-l,4-dithiines partly resembles the fragmentation of the corresponding dihydro-l,4-oxathiines. The presence of the two sulphur atoms in dihydro-l,4-dithiines give rise to more stable molecular ions than observed in the case of the dihydro-1,4-oxathiine analogues. Fragmentations of dihydro-l,4-dithiines can also involve extrusions of alkylradicals or HS-radical from the heterocyclic rings of molecular ions.