On Transition Structures for Hydride Transfer Step in Enzyme Catalysis. A Comparative Study on Models of Glutathione Reductase Derived from Semiempirical, HF, and DFT Methods

As a model of the chemical reactions that take place in the active site of gluthatione reductase, the nature of the molecular mechanism for the hydride transfer step has been characterized by means of accurate quantum chemical characterizations of transition structures. The calculations have been carried out with analytical gradients at AM1 and PM3 semiempirical procedures, ab initio at HF level with 3-21G, 4-31G, 6-31G, and 6-31G basis sets and BP86 and BLYP as density functional methods. The results of this study suggest that the endo relative orientation on the substrate imposed by the active site is optimal in polarizing the C4-Ht bond and situating the system in the neighborhood of the quadratic region of the transition structure associated to the hydride transfer step on potential energy surface. The endo arrangement of the transition structure results in optimal frontier HOMO orbital interaction between NADH and FAD partners. The geometries of the transition structures and the corresponding transition vectors, that contain the fundamental information relating reactive fluctuation patterns, are model independent and weakly dependent on the level of theory used to determine them. A comparison between simple and complex molecular models shows that there is a minimal set of coordinates describing the essentials of hydride transfer step. The analysis of transition vector components suggests that the primary and secondary kinetic isotope effects can be strongly coupled, and this prompted the calculation of deuterium and tritium primary, secondary, and primary and secondary kinetic isotope effects. The results obtained agree well with experimental data and demonstrate this coupling.     

Duality and intersection theory in complex manifolds. I

We introduce the concept of a twisting cochain and a twisted complex associated to a coherent sheaf. For sheaves of submanifolds these twisted complexes are used to construct on cochain level the Grothendieck theory of dual class and Gysin map. These explicit constructions give, for instance, a local formula for dual class of higher codimensional submanifolds. We prove a refined version of the Hirzebruch Riemann Roch using such local formulas. We also prove a theorem on when global analytic intersection classes can be computed from first order geometric data. This theory will be used to prove the Holomorphic Lefschetz formula (in Part II) and the Hirzebruch Riemann Roch for analytic coherent sheaves.The first author is supported in part by NSF grants GP-36418X1 and MCS 76-08478. The second by MCS 75-07986 and Sonderforschungsbereich Theoretische Mathematik at Bonn University     

Eigenvectors and cyclic vectors of bilateral weighted shifts. II: Simply invariant subspaces

Let T be an injective bilateral weighted shift onl ² thought as "multiplication by λ" on a space of formal Laurent series L²(β). (a) If L²(β) is contained in a space of quasi-analytic class of functions, then the point spectrum σ_p(T^?) of T^? contains a circle and the cyclic invariant subspaceM _f of T generated by f is simply invariant (i.e., ∩{(T^k M _f)^?: k ≥ 0}= {0}) for each f in L²(β); (b) If L²(β) contains a non-quasi-analytic class of functions (defined on a circle г) of a certain type related with the weight sequence of T, then there exists f in L²(ß) such thatM _f is a non-trivial doubly invariant subspace (i.e., (TM _f)^? =M _f); furthermore, if г ? σ_p(T^*), then σ_p (T^*) = г and f can be chosen so that σ_p([T∣M _f]^*) = г?{α}, for some α ε г. Several examples show that the gap between operators satisfying (a) and operators satisfying (b) is rather small.     

Crystal and Molecular Structure of (BzlMe3N) 2 + [Fe2OCl6]2-

The crystal and molecular structure of (BzlMe₃N) ₂ ⁺ [Fe₂OCl₆]^2- has been determined. The asymmetric unit contains two benzyltrimethylammonium cations and two half -oxo-bis(trichloro-iron(III)) anions. The bridging -oxygen atoms of these anions are located over crystallographic symmetry elements. Therefore, the two anions resulting from the symmetry operations correspond to two different conformers presenting angular and linear dispositions of the Fe-O-Fe bond angle. Mössbauer spectrum consists of two asymmetric lines that are adequately simulated by two equally populated quadrupole doublets associated with the two iron sites.     

Synthesis and Characterization of Canola-Based Cholesteryl Ester and Nematic E7 Mixture

Abstract

The fatty acid of Canola Oil, 61% of which is Oleic acid, was extracted. Fourier Transform Infrared Spectrophotometry (FTIR) confirmed the fatty acid extraction. Canola-based Cholesteryl Ester (CANCE) was obtained through esterification. FTIR scans of the CANCE and the fatty acid were compared to verify the complete esterification. The resulting crude product is a yellow wax with some crystals embedded on it. Thin layer chromatography was then performed to determine the appropriate solvent for the column chromatography to purify the crude sample. The purified product was characterized using Optical Polarizing Microscopy and Differential Scanning Calorimetry. Mixtures of the Nematic E7 and CANCE in different ratios were prepared. Transition temperatures of each mixture were determined using differential scanning calorimetry and verified using optical polarizing microscopy.     

Determination of UV filters in river water samples by in‐line SPE‐CE‐MS

The use of SPE coupled in‐line to CE using electrospray MS detection (in‐line SPE‐CE‐ESI‐MS) was investigated for the preconcentration and separation of four UV filters: benzophenone‐3, 2,2‐dihydroxy‐4‐methoxybenzophenone, 2,4‐dihydroxybenzophenone and 2‐phenylbenzimidazole‐5‐sulphonic acid. First, a CE‐ESI‐MS method was developed and validated using standard samples, obtaining LODs between 0.06 μg/mL and 0.40 μg/mL. For the in‐line SPE‐CE‐ESI‐MS method, three different sorbents were evaluated and compared: Oasis HLB, Oasis MCX, and Oasis MAX. For each sorbent, the main parameters affecting the preconcentration performance, such as sample pH, volume, and composition of the elution plug, and sample injection time were studied. The Oasis MCX sorbent showed the best performance and was used to validate the in‐line SPE‐CE‐ESI‐MS methodology. The LODs reached for standard samples were in the range between 0.01 and 0.05 ng/mL with good reproducibility and the developed strategy provided sensitivity enhancement factors between 3400‐fold and 34 000‐fold. The applicability of the developed methodology was demonstrated by the analysis of UV filters in river water samples.     

Synthesis of Densely Functionalised 5‐Halogen‐1,3‐oxazin‐2‐ones by Halogen‐Mediated Regioselective Cyclisation of N‐Cbz‐Protected Propargylic Amines: A Combined Experimental and Theoretical Study

A very efficient synthesis of 5‐halogen‐1,3‐oxazin‐2‐ones has been accomplished by the halocyclisation reaction of chiral nonracemic N‐carbobenzyloxy (N‐Cbz)‐protected propargylic amines by using I₂, Br₂ and Cl₂ as electrophile sources. The nature of the halogen influences the reaction time and yield. However, in all cases the reaction is totally regioselective taking place through a 6‐endo‐dig process regardless of the nature of the halogen and of the substituents in the starting material. To rationalise the experimental results, theoretical studies at the B3LYP/6‐311G* level have been performed.     

Structural Diversity from the Transannular Cyclizations of Natural Germacrone and Epoxy Derivatives: A Theoretical–Experimental Study

Treatment of germacrone ( 1 ) with different electrophiles, and of its epoxy derivatives germacrone‐4,5‐epoxide ( 2 ), germacrone‐1,10‐epoxide ( 3 ) and isogermacrone‐4,5‐epoxide ( 4 ) with Brönsted/Lewis acids and Ti^III, gives rise to a great structural diversity. Thus, by using a maximum of two steps, the production of more than 40 compounds corresponding to 14 skeletons is described. Computational calculations rationalizing the structural divergence produced are also described. Finally, since some of the compounds generated are bioactive natural sesquiterpenes, the mechanisms of formation of these substances will provide new insights in their biosynthesis.