Wavelets and molecular structure

Summary The wavelet method offers possibilities for display, editing, and topological comparison of proteins at a user-specified level of detail. Wavelets are a mathematical tool that first found application in signal processing. The multiresolution analysis of a signal via wavelets provides a hierarchical series of best lower-resolution approximations. B-spline ribbons model the protein fold, with one control point per residue. Wavelet analysis sets limits on the information required to define the winding of the backbone through space, suggesting a recognizable fold is generated from a number of points equal to 1/4 or less the number of residues. Wavelets applied to surfaces and volumes show promise in structure-based drug design.This paper is based on a presentation given at the 14th Molecular Graphics and Modelling Society Conference, held in Cairns, Australia, August 27–September 1, 1995.     

Acryloyl-modified cellulose nanocrystals: effects of substitution on crystallinity and copolymerization with acrylic monomers

Cellulose nanocrystals (CNCs) are crystalline nano-rods that have high specific strength with hydroxyl surface chemistry. A wide range of chemical modifications have been performed on the surface of CNCs to increase their potential to be used in applications where compatibilization with other materials is required. Understanding the surface chemistry of CNCs and critically examining the functionalization technique are crucial to enable control over the extent of modification and the properties of CNCs. This work aims to optimize the surface modification of wood-derived CNCs with isocyanatoethyl methacrylate (IEM), a bifunctional molecule carrying both isocyanate and vinyl functional groups. We studied the effect of modification reaction time and temperature on the degree of substitution, crystallinity, and morphology of the CNCs. We found that the degree of modification is a strong and increasing function of reaction temperature over the range studied. However, the highest temperature (65 °C) and the longest time of reaction (6 h) resulted in shorter, thinner, and less crystalline CNCs. We obtained surface hydroxyl conversion of 60.1?±?6% and percent crystallinity of 84% by keeping the reaction shorter (30 min) at 65 ºC. Also, the copolymerization ability of modified CNCs was verified by polymerizing attached IEM groups with acrylic monomers via solution polymerization. The polymer-grafted CNCs (6% w/w) dispersed better in an acrylic polymer matrix compared to unmodified CNCs (umCNCs), resulting in approximately 100% improvement in the tensile strength and about 53% enhancement in the hardness of the acrylic, whereas addition of 6% w/w umCNCs did not influence the strength and hardness.

Graphic abstract

     

Synthesis and Biological Activities of Azalamellarins

The synthesis of azalamellarins, a new series of lactam analogues of biologically active lamellarins, was achieved using Cu^I‐mediated and microwave‐assisted C? N_amide bond formation. Seventeen azalamellarins, including N‐allylazalamellarins and N‐propylazalamellarins χ‐D, L ‐N, and J‐dehydro J, were synthesized and evaluated for their cytotoxicity against the cancer cell lines HuCCA‐1, A‐549, HepG2, and MOLT‐3. The results showed that certain azalamellarins exhibited good activities in the micromolar IC₅₀ value range (IC₅₀=the drug concentration that causes 50 % of cell‐growth inhibition after 72 h of continuous exposure to the test molecule), comparable to their parent lamellarin analogue.     

A general,enantioselective synthesis of 2-substituted thiomorpholines and thiomorpholine 1,1-dioxides

In the course of our drug discovery programs, we had need to access chiral, 2-substituted thiomorpholines and their oxidized congeners, thiomorpholine 1,1-dioxides. Here, we disclose a high-yielding, general protocol for the enantioselective synthesis of C2-functionalized thiomorpholines and thiomorpholine 1,1-dioxides.     

Papieruntersuchung

Ohne Zusammenfassung     

Total synthesis and determination of the absolute configuration of frondosin B.

Two concise syntheses of (+/-)-frondosin B (1), an interleukin-8 receptor antagonist, have been achieved from commercially available 5-methoxysalicylaldehyde. The seven-membered ring in ketone 33, the common intermediate for both syntheses, was built by a classical Friedel-Crafts reaction. The key step of the first route was facile cationic cyclization of the vinylogous benzofuran to the trisubstituted olefin (30 --> 16 + 38) to construct a six-membered carbocycle. Although this route demonstrated the efficacy of the stepwise approach to the frondosin ring-system, it also resulted in olefinic isomers that were easily isomerized in acidic conditions. In the second route, we utilized a Diels-Alder reaction between sterically demanding diene 42 and nitroethylene to fix the double bond in its required position in the resultant dimethylcyclohexane ring. A third total synthesis was devised for the purpose of determining the absolute configuration of frondosin B. It reached diene 42, this time in the enantiomerically defined form. From this point, naturally configured frondosin B was obtained in the enantiomerically enriched form. These studies establish the absolute configuration of the secondary methyl center in frondosin B to be R.     

Effect of Poly(3‐octylthiophene) Doping on the Attachment and Proliferation of Osteoblasts

The effect of doping P3OT with ferric chloride on the attachment and proliferation of MC3T3‐E1 osteoblasts is reported. Cell density and area correlated strongly with doping concentration: cells were larger and exhibited better spreading as doping increased. Cells cultured on undoped P3OT showed a decrease in proliferation between 24 and 48 h followed by a recovery after 72 h. However, this trend diminished with increasing doping concentration, and disappeared completely at the highest dopant level investigated. Analysis of cell‐cell spatial distributions suggested that contact inhibition of proliferation occurred similarly on both undoped and doped P3OT. From these results, FeCl₃‐doping had no significant deleterious effect on attachment or proliferation of osteoblasts in vitro.

     

Silver(I) 3-aminomethylpyridine complexes, part 2: effect of ligand ratio, hydrogen bonding, and pi-stacking with an interacting anion

Reaction of 3-aminomethylpyridine (3-amp) with silver(I) salts of triflate (OTf-) and trifluoroacetate (tfa-) produce a variety of multidimensional coordination networks whose structures depend on the stoichiometry of the components present. A 1:1 ratio of 3-amp to AgX produces a linear polymer, 1, when X = tfa- and a planar sheet, 2, when X = OTf-. Addition of a second equivalent of ligand increases the dimensionality of both structures by one to form a two-dimensional sheet, 3, and a three-dimensional system, 4, for their respective anions. Addition of 2,2'-bipyridine (bipy) to solutions of any of the previous compounds produces the fixed-ratio complexes 5 (tfa- salt) and 6 (OTf- salt). The bipyridyl ligand halts the polymerization of compounds 1-4 by cutting the chain after each silver(I) link and forcing a 1:2:2 ratio of 3-amp to AgX to bipy. Compound 5, however, remains polymeric in nature due to the closed-shell Ag-Ag interactions of the planar metals holding the monomers together. Differences between structures of each ratio stem from the differences in basicity and in the extra degree of H-bonding ability that the OTf- anion has over tfa-.