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91.
Rajat Kumar Pal Kamran Haider Divya Kaur William Flynn Junchao Xia Ronald M Levy Tetiana Taran Lauren Wickstrom Tom Kurtzman Emilio Gallicchio 《Journal of computer-aided molecular design》2017,31(1):29-44
As part of the SAMPL5 blinded experiment, we computed the absolute binding free energies of 22 host–guest complexes employing a novel approach based on the BEDAM single-decoupling alchemical free energy protocol with parallel replica exchange conformational sampling and the AGBNP2 implicit solvation model specifically customized to treat the effect of water displacement as modeled by the Hydration Site Analysis method with explicit solvation. Initial predictions were affected by the lack of treatment of ionic charge screening, which is very significant for these highly charged hosts, and resulted in poor relative ranking of negatively versus positively charged guests. Binding free energies obtained with Debye–Hückel treatment of salt effects were in good agreement with experimental measurements. Water displacement effects contributed favorably and very significantly to the observed binding affinities; without it, the modeling predictions would have grossly underestimated binding. The work validates the implicit/explicit solvation approach employed here and it shows that comprehensive physical models can be effective at predicting binding affinities of molecular complexes requiring accurate treatment of conformational dynamics and hydration. 相似文献
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93.
Jaswinder Kaur Virk Vikas Gupta Sanjiv Kumar Ranjit Singh Ravindra Kumar Rawal 《液相色谱法及相关技术杂志》2017,40(20):1031-1036
Polygonatum cirrhifolium (Meda) plant is being used in number of rejuvenating Ayurvedic formulations. Ever rising demands, lack of natural sources, and insufficient quantity, to meet the requirements of market, the raw material has led toward the use of official substitutes recommended by the Department of AYUSH that has further encouraged manufacturers for adulteration of formulations by other substandard/spurious raw drugs. Literature reveals that more than 60% Ayurvedic parameters as well as pharmacological actions of Ashtawarga plants do not match with their substitutes leading to reduced efficacy of the drugs along with loss of faith for use of herbal drugs. Consumers are forced to pay for the material which has never been used for high-cost claimed formulation. The situation is being exploited by manufacturers because regulatory authorities lack the tools (marker compound) needed for identification of authentic plant. Methanolic extract of rhizomes of plant was subjected to column chromatography. Isolated compound has been characterized as (Z)-4-amino-4-oxobut-2-enoic acid (maleamic acid/maleamate/maleic monoamide/maleic acid monoamide) by chemical test, melting point, IR/NMR/mass/UV spectral analysis. It is the first report in Polygonatum genus and can be used as a marker for identification of the plant in market formulations. 相似文献
94.
Runjhun Tandon Vijay Luxami Harsovin Kaur Nitin Tandon Kamaldeep Paul 《Chemical record (New York, N.Y.)》2017,17(10):956-993
The poor pharmacokinetics, side effects and particularly the rapid emergence of drug resistance compromise the efficiency of clinically used anticancer drugs. Therefore, the discovery of novel and effective drugs is still an extremely primary mission. Naphthalimide family is one of the highly active anticancer drug based upon effective intercalator with DNA. In this article, we review the discovery and development of 1,8‐naphthalimide moiety, and, especially, pay much attention to the structural modifications and structure activity relationships. The review demonstrates how modulation of the moiety affecting naphthalimide compound for DNA binding that is achieved to afford a profile of antitumor activity. The DNA binding of imide and ring substitution at naphthalimide, bisnaphthalimide, naphthalimide‐metal complexes is achieved by molecular recognition through intercalation mode. Thus, this synthetic/natural small molecule can act as a drug when activation or inhibition of DNA function, is required to cure or control the cancer disease. The present study is a review of the advances in 1,8‐naphthalimide‐related research, with a focus on how such derivatives are intercalated into DNA for their anticancer activities. 相似文献
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96.
The major histocompatibility complex (MHC) harbours genes that have a primary function of regulating immune responsiveness. Our data on the distribution patterns of molecular subtypes of HLA class I and II extended haplotypes in India suggest that: (1) Asian Indians have extreme diversity in the MHC region, with several novel and unique alleles and disease-associated MHC haplotypes (e.g. the autoimmune-favouring A26-B8-DR3 haplotype); (2) there have been selective environmental and microbial pressures in India that directed either the generation of novel alleles through founder effect or the expansion of other alleles due to geophysical or socio-economic barriers, and (3) Asian Indians have a unique repertoire of peptide-presenting molecules to deal with pathogen-derived autoreactive antigens. This level of polymorphism concentrated within the MHC presents a formidable obstacle to the development of peptide-based vaccines, e.g. for AIDS. Further, studies conducted by us and others have provided a genetic basis for the possible predisposition and fast progression of HIV infections in the Indian population. Since there is selective predominance of different HLA alleles and haplotypes in different populations, a dedicated global screening effort is required to develop MHC-based vaccines against infectious diseases. 相似文献
97.
Kundan Tayade Amanpreet Kaur Sandesh Tetgure G. Krishana Chaitanya Narinder Singh Anil Kuwar 《Analytica chimica acta》2014
The (13E,19E)-N1′,N3′-bis[4-(diethylamino)-2-hydroxybenzylidene]malonohydrazide (L) has been developed for the detection of Th4+ ions using dual channel signalling system. The UV–vis absorbance and fluorescence spectroscopic data revealed the formation of L–Th4+ complex in 1:1 equilibrium. The density functional theory (DFT) also confirms the optimum binding cavity for the recognition of metal ion. The binding constant computed from different mathematical models for an assembly of L–Th4+. The detection limit of L for Th4+ recognition is to a concentration down to 0.1 μM (0.023 μg g−1). The present sensing system is also successfully applied for the detection of Th4+ ion present in soil near nuclear atomic plants. 相似文献
98.
Expedient Protocols for the Installation of 1,5‐Benzoazepino‐Based Privileged Templates on the 2‐Position of 1,4‐Benzodiazepine Through a Phenoxyl Spacer 下载免费PDF全文
An efficient novel strategy for the hetero‐annulation of 2‐chloro‐1,4‐benzodiazepine ring, substituted on its 5‐position with a carboxamido group ( 5 ), has been developed to allow the incorporation of 1,5‐benzodiazepine, 1,5‐benzothiazepine, and 1,5‐benzoxazepine ( 8 , 9 , 10 , 11 , 12 , 13 ) rings through their dimethylaminomethylene ketone intermediate ( 7 ). 相似文献
99.
Navjeet Kaur 《合成通讯》2014,44(22):3229-3247
The development of new strategies for synthesis of five-membered O,N,N-heterocycles has remained a highly attractive but challenging proposition. An overview of the application of microwave irradiation in oxygen and two nitrogen atoms containing five-membered heterocyclic compounds synthesis is presented, focusing on the developments in the past 5–10 years. This contribution covers the literature concerning the total synthesis of five-membered O,N,N-heterocycles. 相似文献
100.
The development of new strategies for synthesis of six-membered O-heterocycles has remained a highly attractive but challenging proposition. An overview of the application of microwave irradiation in oxygen-containing six-membered heterocyclic compounds synthesis is presented, focusing on the developments in the past 5–10 years. This contribution covers the literature concerning the total synthesis of six membered O-heterocycles. 相似文献