Aspherical‐Atom Modeling of Coordination Compounds by Single‐Crystal X‐ray Diffraction Allows the Correct Metal Atom To Be Identified

Single‐crystal X‐ray diffraction (XRD) is often considered the gold standard in analytical chemistry, as it allows element identification as well as determination of atom connectivity and the solid‐state structure of completely unknown samples. Element assignment is based on the number of electrons of an atom, so that a distinction of neighboring heavier elements in the periodic table by XRD is often difficult. A computationally efficient procedure for aspherical‐atom least‐squares refinement of conventional diffraction data of organometallic compounds is proposed. The iterative procedure is conceptually similar to Hirshfeld‐atom refinement (Acta Crystallogr. Sect. A­ 2008 , 64, 383–393; IUCrJ. 2014 , 1,61–79), but it relies on tabulated invariom scattering factors (Acta Crystallogr. Sect. B­ 2013 , 69, 91–104) and the Hansen/Coppens multipole model; disordered structures can be handled as well. Five linear‐coordinate 3d metal complexes, for which the wrong element is found if standard independent‐atom model scattering factors are relied upon, are studied, and it is shown that only aspherical‐atom scattering factors allow a reliable assignment. The influence of anomalous dispersion in identifying the correct element is investigated and discussed.     

Radiological assessment of natural and fallout radioactivity in the soil of Chamba and Dharamshala areas of Himachal Pradesh,India

This paper presents the results of measurement of natural and fallout radioactivity in soil samples of Chamba and Dharamshala areas in Himachal Pradesh, India. Spatial distribution of ²³⁸U, ²²⁶Ra, ²³²Th, ⁴⁰K, ¹³⁷Cs was determined using High resolution gamma-ray spectrometry. The mean activity concentration in Chamba region due to ²³⁸U, ²³²Th, ⁴⁰K and ¹³⁷Cs was 32.3, 58.4, 588.3, and 10.9 Bq kg⁻¹, respectively, whereas in Dharamshala it was 35.7, 61.3, 594.9, 10.0 Bq kg⁻¹, respectively. Absorbed gamma dose rate (D) in air was calculated using appropriate dose conversion factors, which was varying from 45 to 103 nGy h⁻¹. To control the radiation exposure due to natural radioactivity in soil, if it is used as building materials, radium equivalent activity (Ra_eq) and activity index were also evaluated. Radium equivalent activity calculated for the soil ranged from 95.5 to 234.2 Bq kg⁻¹ with average of 171.0 Bq kg⁻¹.The calculated Activity concentration index was ranged from 0.34 to 0.85 with an average value of 0.64. The natural and fallout radioactivity in soil of this region is comparable with Indian average and other parts of the world. The percentage contribution of ²³⁸U, ²³²Th and ⁴⁰K and ¹³⁷Cs to the average external gamma dose rate was 22, 46, 32, 2%, respectively. This shows that the dose contribution due to fallout radioactivity is negligible as compared to the natural radioactivity.     

Investigation of the Removal of Lead by Adsorption onto 1‐(2‐Thiazolylazo)‐2‐Naphthol (TAN) Imbedded Polyurethane Foam from Aqueous Solution

A new preconcentration method is presented for lead on TAN‐loaded polyurethane foam (PUF) and its measurement by differential pulse anodic stripping voltammetry (DPASV). The optimum sorption conditions of 1.29 × 10^?5 M solution of Pb(II) ions on TAN‐loaded PUF were investigated. The maximum sorption was observed at pH 7 with 20 minutes equilibrated time on 7.25 mg mL^?1 of TAN‐loaded foam. The kinetic study indicates that the overall sorption process was controlled by the intra‐particle diffusion process. The validity of Freundlich, Langmuir and Dubinin ‐ Radushkevich adsorption isotherms were tested. The Freundlich constants 1/n and K_F are evaluated to be 0.45 ±0.04 and (1.03 +0.61) × 10^?3 mol g^?1, respectively. The monolayer sorption capacity and adsorption constant related to the Langmuir isotherm are (1.38 ± 0.08) × 10^?5 mol g^?1 and (1.46 ± 0.27) × 10⁵ L mol^?1, respectively. The mean free energy of Pb(II) ions sorption on‐TAN loaded PUF is 11.04 ± 0.28 kJ mol^?1 indicating chemisorption phenomena. The effect of temperature on the sorption yields thermodynamics parameters of ΔH, ΔS and ΔG at 298 K that are 15.0 ± 1.4 kJ mol^?1, 74 ±5 J mol^?1 K^?1 and ‐7.37 ± 0.28 kJ mol^?1, respectively. The positive values of enthalpy (ΔH) and entropy (ΔS) indicate the endothermic sorption and stability of the sorbed complexes are entropy driven. However, the negative value of Gibb's free energy (ΔG) indicates the spontaneous nature of sorption. On the basis of these data, the sorption mechanism has been postulated. The effect of different foreign ions on the sorption and desorption studies were also carried out. The method was successfully applied for the determination of lead from different water samples at ng levels.     

Structure factor of amorphous TiO2 nanoparticle; Molecular Dynamics Study

Three samples of amorphous TiO₂ of 3 nm size are prepared by molecular dynamics simulations using different heating and quenching rates and open boundary conditions. Matsui–Akaogi force field is used to calculate the correlation functions. It is found that atomic distribution in these samples differ within the limit of 4%. The calculated coordination numbers suggest that 52–54% Ti atoms are 6-fold coordinated, 31–32% Ti atoms are 5-fold coordinated, 7–10% are 4-fold coordinated and few Ti atoms even 7-fold coordinated through vertex and edge sharing in these samples. On the other hand 66–68% oxygen atoms remain 3-fold coordinated, 25–28% are 2-fold coordinated and 5–6% oxygen atoms become 4-fold coordinated. Most of the over coordinated and under coordinated strained structures are in the core and surface regions respectively. The agreement between the calculated and measured reduced structure factors suggests that atomic arrangements in the laboratory samples prepared by sputtering and sol-gel methods may be similar to those predicted by molecular dynamics simulations.     

Radionuclide contents and their correlation with radon-thoron exhalation in soil samples from mineralized zone of Himachal Pradesh,India

Journal of Radioanalytical and Nuclear Chemistry - The radionuclides have been evaluated by utilizing NaI(Tl) gamma spectrometric technique from soil samples, mainly used in construction purposes....     

Assessment of natural radioactivity in soil samples and comparison of direct and indirect measurement of environmental air kerma rate

This study presents the high purity germanium (HPGe) gamma spectrometric measurement of natural radioactivity mainly due to ²²⁶Ra, ²³²Th and ⁴⁰K in soil samples collected in Ferozepur and Faridkot district of Punjab, India. ²²⁶Ra activity varied from 28.6 to 51.1 Bq kg⁻¹ with the mean of 39.7 Bq kg⁻¹. The range and mean activity of ²³²Th were 42.9–73.2 and 58.2 Bq kg⁻¹, respectively. ⁴⁰K activity was in the range of 470.9–754.9 Bq kg⁻¹ with the mean of 595.2 Bq kg⁻¹. The air kerma rate (AKR) at 1 m height from the ground was also measured using gamma survey meter in all the sampling locations, which was ranging from 92.1 to 122.8 nGy h⁻¹ with the mean of 110.6 nGy h⁻¹. The radiological parameters such as Ra_eq and activity index of the soil samples were also evaluated, which are the tools to assess the external radiation hazard due to building materials. The mean and range of the Ra_eq values were 168.7 and 132.9–210.4 Bq kg⁻¹, respectively, whereas the activity index varied from 0.5 to 0.8 with the mean value of 0.62. These indices show that the indoor external dose due to natural radioactivity in the soil used for the construction will not exceed the dose criteria. The AKR was also evaluated from soil activity concentration and altitude correction of cosmic radiation contribution. The statistical tests such as Pearson correlation, spearman rank correlation, box and whisker plot, the Wilcoxon/Mann–Whitney test and chi-square test, were used to compare the measured AKR with evaluated AKR, which indicates good correlation.     

Normalizing molecular docking rankings using virtually generated decoys

Drug discovery research often relies on the use of virtual screening via molecular docking to identify active hits in compound libraries. An area for improvement among many state-of-the-art docking methods is the accuracy of the scoring functions used to differentiate active from nonactive ligands. Many contemporary scoring functions are influenced by the physical properties of the docked molecule. This bias can cause molecules with certain physical properties to incorrectly score better than others. Since variation in physical properties is inevitable in large screening libraries, it is desirable to account for this bias. In this paper, we present a method of normalizing docking scores using virtually generated decoy sets with matched physical properties. First, our method generates a set of property-matched decoys for every molecule in the screening library. Each library molecule and its decoy set are docked using a state-of-the-art method, producing a set of raw docking scores. Next, the raw docking score of each library molecule is normalized against the scores of its decoys. The normalized score represents the probability that the raw docking score was drawn from the background distribution of nonactive property-matched decoys. Assuming that the distribution of scores of active molecules differs from the nonactive score distribution, we expect that the score of an active compound will have a low probability of having been drawn from the nonactive score distribution. In addition to the use of decoys in normalizing docking scores, we suggest that decoy sets may be a useful tool to evaluate, improve, or develop scoring functions. We show that by analyzing docking scores of library molecules with respect to the docking scores of their virtually generated property-matched decoys, one can gain insight into the advantages, limitations, and reliability of scoring functions.     

A Remarkable cis‐ and trans‐Spanning Dibenzylidene Acetone Diphosphine Chelating Ligand (dbaphos)

A multidentate and flexible diolefin–diphosphine ligand, based on the dibenzylidene acetone core, namely dbaphos ( 1 ), is reported herein. The ligand adopts an array of different geometries at Pt, Pd and Rh. At Pt^II the dbaphos ligand forms cis‐ and trans‐diphosphine complexes and can be defined as a wide‐angle spanning ligand. ¹H NMR spectroscopic analysis shows that the β‐hydrogen of one olefin moiety interacts with the Pt^II centre (an anagostic interaction), which is supported by DFT calculations. At Pd⁰ and Rh^I, the dbaphos ligand exhibits both olefin and phosphine interactions with the metal centres. The Pd⁰ complex of dbaphos is dinuclear, with bridging diphosphines. The complex exhibits the coordination of one olefin moiety, which is in dynamic exchange (intramolecular) with the other “free” olefin. The Pd⁰ complex of dbaphos reacts with iodobenzene to afford trans‐[Pd^II(dbaphos)I(Ph)]. In the case of Rh^I, dbaphos coordinates to form a structure in which the phosphine and olefin moieties occupy both axial and equatorial sites, which stands in contrast to a related bidentate olefin, phosphine ligand (“Lei” ligand), in which the olefins occupy the equatorial sites and phosphines the axial sites, exclusively.